Genomic Location: chr14:6220303...6242010
NR annotation: CAB3981060.1, WD repeat and FYVE domain-containing 3 isoform X3 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families
| CDS |
| ENSAPQT00000008300 |
| Transcript |
| ENSAPQT00000008300 |
| Protein |
| ENSAPQP00000007439.1 |
| UniProt accession | Description |
|---|---|
| Q6VNB8 | WD repeat and FYVE domain-containing protein 3 OS=Mus musculus OX=10090 GN=Wdfy3 PE=1 SV=1 |
| Q8IZQ1 | WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens OX=9606 GN=WDFY3 PE=1 SV=2 |
| E9Q2M9 | WD repeat- and FYVE domain-containing protein 4 OS=Mus musculus OX=10090 GN=Wdfy4 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002329 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15787 all species → | DUF4704 | Neurobeachin/BDCP, DUF4704 alpha solenoid region | Repeat | Interproscan |
| PF01363 all species → | FYVE | FYVE zinc finger | Domain | Interproscan |
| PF20426 all species → | NBCH_WD40 | Neurobeachin beta propeller domain | Repeat | Interproscan |
| PF14844 all species → | PH_BEACH | PH domain associated with Beige/BEACH | Domain | Interproscan |
| PF02138 all species → | Beach | Beige/BEACH domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR031570 all species → | Domain | Neurobeachin/BDCP, DUF4704 | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR051944 all species → | Family | BEACH domain-containing protein | Interproscan |
| IPR023362 all species → | Domain | PH-BEACH domain | Interproscan |
| IPR000306 all species → | Domain | FYVE zinc finger | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR000409 all species → | Domain | BEACH domain | Interproscan |
| IPR046851 all species → | Domain | Neurobeachin, beta-propeller domain | Interproscan |
| IPR036372 all species → | Homologous_superfamily | BEACH domain superfamily | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR017455 all species → | Domain | Zinc finger, FYVE-related | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46108 all species → | BLUE CHEESE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22262 | WDFY3, ALFY; WD repeat and FYVE domain-containing protein 3 | - | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Leptogorgia sarmentosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptogorgia sarmentosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |