Gene detail

Detailed information of ENSAPQP00000007685.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4024092.1, Hypothetical predicted protein, partial [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000008568

ATGTATAACAATATTGGCCTCACGACGCCACGAGGCTCCGGTACGAACGGTTATGTTACGCGAAATTTGTCGTTCGTCGCGAACCAAAAAGAACGCGTCAGCTACAAAACTGGCCCGGATTTGGCGAAGTTTGAACAAACGATGACCAAGAAGCCGAACAAAGAGATACTGGAGCATGAAAGAAAGCGACAGATCGAGGTCGAGTGCACGAAACTGGAGGATACCTTGGAAGAGCAAGGGTTTACCCAAACTGAAATTGATAATGACGTTGCTAAATTGCGGGAGAAATTAATGGAAGAAGGAGGGTATAATGAGGAAAGAGAAGGCACTAAAAAGACTCCTTTGACAGAGACCCATCAAATTGCTCAAGCGAAGGAAGAAAAGAATGCAAGATTCAAAGAAGCCTTTGGGATCAAAGACGATTATAAAGGAGGGACGGCGTTCAATCAAGAACTACAGGCCATCGAgagaatgaaagaaaaagaggcGAAAgagaaagaagcaaaaaaGTACGAGTCGAGCAAATCCAAGAAGtccaaaaagagaaaaacagaaaagaaCGTTTCTGATTCTGACTCCAGCAACAGCTCCGAAAGTGACCGTGATAAAAGGAAgagaaaaaaagcaaaagaaaaacagTCCGAGAGAGATCGATCTGTCAGTTCTGACTCGGATAGAAGAGATTCTGTGGAACGTAATGGCAGAAGAGAAAGATCACCAAAGCGAGATAAAGACAAAAGGCGTTCACCATCTGCTTCACCTGAAAGAAAGTCAACAAAAAAGAGAGATAGCTACATAGAGCAACGAGAAAAAGACAAAGAAAGAAGCCGAGATGATGAGGAAAGGAGAGCGGCATTGGAGGAGAAATCTAAagaagaaacaaagaaaaagcaGAAGAAAAAAGATCACAAAGAAGATGGGCAGTCTGTTGGCTCTAACGTCAGCAGGCCTGGGAAGAAGCTGAAGGCAGAAGATCAGATATATCAAGCAATGTTAGCTGACTACCAACGAAAACAGAGAAAGACACAGAAACCACCATCACCCAGCGATTCATCTTCTGATTCCAGTGAAGATGAACAACAACAGAGTGCAGTTGGTGAGAGACGTCGTGCATCGCGATCACCAAGCCCCCGTCAAATGCAGAACCGTGACTCGAGGTCTCCTCCAAGAAGATCCCCCCAACGTTCTCCACCACGCCGTCAACTTTCGCGCAGCCCTCCTGCACGTTCTCCGAGTCCGAAGCAAAAACCAAGTCGTCAATCTGATGTTCAAAGAAATCGTCGATCAAGTCCCCCAAAATCGCCCAGTCCGCCGCAAAGAAAAGgTCGTCCTAGTCCAAGTCGTTCCCAAAGTCCGTCAGAACGGCAACGTCGTTCTAAACGTTCCAGCTCGAGGTCCACCAGTCCTCCTCGAAAGGCAAGCAGCCCACGACGCACACAAGCTCAACCTCAGAGACAACGACAGCCAAGTAAGTCCCGATCACCGAGTCCACCTCAGAGGAAAGGTCGTGGGAGTCCAAGTCGATCTCCTCCAGGCAGTCCACGAAGACGCCCCTCCGGCAGTCCACGAAGACGTCCTTCCGGCAGTCCACGAAGACGTCCCTCCGGCAGTCCACGAAGACGCCCCTCCGGCAGTCCACGAAGACGTCCTTCCGGCAGTCCACGAAGACGTCCTTCCGGCAGTCCACGAAGACGTCCCTCCGGCAGTCCAAGAAGACGTCCCAGCCCGCACCGGTCTACCAGTCCTCCGCAAAGAAAACGGCGGTCTAGCCCACCTCGGAGAAGACGCGAGCCATCTCGTAGTAAATCTCGGTCGGCCAGCCCCGCACAGAGAAGAGGCAGACCAAGTCCTCAGAGACAGAGCCCGCCGCAGAGGGCCAGGCTTGGCTCGCGGCAGTCCGCTAGTCCGCCAAGACGTCGCCAATCCAGTCCACCACAGAGAAGGCAGCGGCCTAGTCCAAGTAGATCAAGGTCGGTCAGTCCGAACCGTCGGCCGAACGAACGCAGACCGATGGCTAGTAGTGCAGACAGAAGAAAGCGCCAGCCTAGCAGAAGCCCCTCACCGTCCGGTAGTCCAGTTCGCCATTCAAAAGAGCGCAGATCATTTGCCAGTGCCGAGCAGCGAAATAAACAGACGAATAGAAGGTCTCGATCGGTCAGCCCACAACCTCAGTCGAAAGAACGTAGACCGGTGGCCCGTGGAAGAAGTCAGTCCAGCAAGAGTCAATCGCGCTCGGCCAGCCCTGTACGTGGTGTGGCCAGTGGTGATAGGAGAAAACGTCAGCCGAGCCGAAGCAGATCTCGGTCGGCCAGTCCGTCCCAAGCTCATCGTCCTGTGGCTAGTGCTGATAGAAGGAGGCGTCAGCCAAGCCGAAGTAGGTCTCGGTCAGTAAGTCCCGTTCGTCCGTCCCAAGGTCGTCGGCCTGTGGCTAGTGTTGGTGGGAGAAAGCGTCAGCCGAGTCGAAGTAAGTCCCGGTCGGGCAGCCCTGTTGGTCGTCGGTCCCAAGAACGTCGGGCTTTAGCCGGCCGAAAACGTCAGCCAAGCAAAAGTAGGTCTCGATCGGCGAGTCCTTCCCGTCGACCCGAAGAGCGTAGACCTGTGGCTAGTGCTGACAGGCGAAGGCGGCAGGCGAACCGAAGTGGATCCCGGTCCGTTAGTCCGCGACGGCCTATGGCCAGCAGTGCGGACCGCAGGAAACGTCAGCCTCGGACTCCATCGCCGGTTCCTGCTCGGGTGGCCAGTCGTTCCCGATCCGCAAGTCCGCCCGCACGCGGCAGACCGTCCCGCTCCCTCAGCGCGGAAAAGGCGAGGTCTTCCCCCTCCAGATCGCCCTCTGGCAGTCCAGCTGTTGAAAACAGGCGCCCTGATCAGAGATCGCCATCGGCCGCGAAGTCTGGAGACGACAGATACAGTCCTTCTCAACTTGTCACAACACCGCCAGCAGCAGTAGCTGAAGCAGCCGAAGAAAGCCCTCCCAAGTCCAAGTGGAAGCCGTTAGCCTCGGTCGCCCCAACCCCTCCGTCCCAAACTAAACAAGCTCCGCACAGAGGTCCCCATACCCCTCCAGGCTCACCTCGTAGAAAGGGACCTCGTACCCCATCGGTATCCCCACGTTCACAAAAGAAAGGCCCGCGGACGCCGTCCGGTTCACCCGCCTCCCGAAAGCGACATCCTCGAAGCCCCCAGCTGAGGGCTGCAAGCAGATCCCCCGTTCCGTCACCGACTCCGGAGAGAAAACCCCGTCGTAAAAAAGGGGCCCGTAGCCCTTCACCTTCCCCGCTCCCCAAAACGCAATCCGGGACCAAAAGCAAAAGACGCCGGAGTCCAACTCCAAGTCCTCCACGTTCACAAAAACAACATCCACGTAGTGCGTCGCGTTCACCCTCGCCCCGGCAACAACCCCCCAGCCCATCAGATTCACCCTCCACCAGCCCGGAAAAAGAGCAACCCTCGCCTTCTCCAAGTCCTCAGAGGCCGCCACCCCGCACCCGCTCCTCACCTCCAAAAAGGCGATCTAGCCCCCCGCGCTCGCAAAGTCCCCAAAGGAGACGACGTAGGCCTTCTGCAAGCCCCCCAAGAAGAgcacccccctccccaccccGTTCTCGCAGCCCCCCAAAACGCGGTCGTCCCAGTCCCTCGCCTAGCCCAAGGAGGAGAGCACGTCCCCAGAGCCCTGGGAACAAACGACGGCAAAGTCCCCGAAGGTCTTCCCAAGGTCAAATTCGCCGTATGTCTCCCGCTCGTAGCAAGTCCCCCAGACGTTCCTCAAAGACCACAAATGACCTGCACTCTCCCCAAGAATCCCGTGGCGTCCCGAGTAAAAAGCTTCAACGGAGTGCAGGCGAGAAGCAAAAATCCTCAAAACAAAAATCATCGCAACCGCAAGCGAAAAAGAAAGTGCAACCGGCTTCGGCCCAATCATCGTCGTCATCTTCCGAAGACAGCTCGAGCAGTTCCGACTCGAGTTCCGATTCAAGCTCGGACTCCGAGAGTGAACAATCGACCAATGAACGTCCGCCTGCGAAGAAACAGAAACTGAAAGCTTCGGACGAGAAGAGTTCTGCTCGAGGTCGAAAGGATAAGGGTCGTGAAATGAAACATCAAGAAAGAAGGGATGACAGTGAGAGGAGAGAGAAACGCGAGCAGATGAAGCCAAAGGGAAGAAAGGAGAAGGAAGCGAAGCTCTCGAAAAAGAAAGGAAAGATGGAGGgcaagaagaaaaaagaagtgtcgaaaaaagaaaagagcaAGAAAAATGAAAGATCGAAACACGGAAAGAATGCTTCGAAGTCGAAGGACAAATCTCGAAAACGTAAATCGAGGAAGAGTGAAAGCGAATCAAGCAGTGAAGAAAGTTCCAGTGGGTCCAGTTCAGAAGAGGTCAGTGGCAGTTCGAGCAGCTCAAGCAACAGCAGCGACTCTGTCGAATGA

Transcript

ENSAPQT00000008568

TCCATCCAGTTAGTGTTTTTAACGTTATGAGATCAGTGAACGTTCGATTTCGAAAAGAACGCTGGGAAGGTTTTGCAAAGCAACCATGATcgaaaaattgtgaaattttacGCAGCGTTTCTTCTCAGTGAAAAGTATGTAAAACCAGCGTTTTTTACGCCAAAACCACAAAAGTACAACTCGTATTGAAAGAAGCGCGAGCCATGTATAACAATATTGGCCTCACGACGCCACGAGGCTCCGGTACGAACGGTTATGTTACGCGAAATTTGTCGTTCGTCGCGAACCAAAAAGAACGCGTCAGCTACAAAACTGGCCCGGATTTGGCGAAGTTTGAACAAACGATGACCAAGAAGCCGAACAAAGAGATACTGGAGCATGAAAGAAAGCGACAGATCGAGGTCGAGTGCACGAAACTGGAGGATACCTTGGAAGAGCAAGGGTTTACCCAAACTGAAATTGATAATGACGTTGCTAAATTGCGGGAGAAATTAATGGAAGAAGGAGGGTATAATGAGGAAAGAGAAGGCACTAAAAAGACTCCTTTGACAGAGACCCATCAAATTGCTCAAGCGAAGGAAGAAAAGAATGCAAGATTCAAAGAAGCCTTTGGGATCAAAGACGATTATAAAGGAGGGACGGCGTTCAATCAAGAACTACAGGCCATCGAgagaatgaaagaaaaagaggcGAAAgagaaagaagcaaaaaaGTACGAGTCGAGCAAATCCAAGAAGtccaaaaagagaaaaacagaaaagaaCGTTTCTGATTCTGACTCCAGCAACAGCTCCGAAAGTGACCGTGATAAAAGGAAgagaaaaaaagcaaaagaaaaacagTCCGAGAGAGATCGATCTGTCAGTTCTGACTCGGATAGAAGAGATTCTGTGGAACGTAATGGCAGAAGAGAAAGATCACCAAAGCGAGATAAAGACAAAAGGCGTTCACCATCTGCTTCACCTGAAAGAAAGTCAACAAAAAAGAGAGATAGCTACATAGAGCAACGAGAAAAAGACAAAGAAAGAAGCCGAGATGATGAGGAAAGGAGAGCGGCATTGGAGGAGAAATCTAAagaagaaacaaagaaaaagcaGAAGAAAAAAGATCACAAAGAAGATGGGCAGTCTGTTGGCTCTAACGTCAGCAGGCCTGGGAAGAAGCTGAAGGCAGAAGATCAGATATATCAAGCAATGTTAGCTGACTACCAACGAAAACAGAGAAAGACACAGAAACCACCATCACCCAGCGATTCATCTTCTGATTCCAGTGAAGATGAACAACAACAGAGTGCAGTTGGTGAGAGACGTCGTGCATCGCGATCACCAAGCCCCCGTCAAATGCAGAACCGTGACTCGAGGTCTCCTCCAAGAAGATCCCCCCAACGTTCTCCACCACGCCGTCAACTTTCGCGCAGCCCTCCTGCACGTTCTCCGAGTCCGAAGCAAAAACCAAGTCGTCAATCTGATGTTCAAAGAAATCGTCGATCAAGTCCCCCAAAATCGCCCAGTCCGCCGCAAAGAAAAGgTCGTCCTAGTCCAAGTCGTTCCCAAAGTCCGTCAGAACGGCAACGTCGTTCTAAACGTTCCAGCTCGAGGTCCACCAGTCCTCCTCGAAAGGCAAGCAGCCCACGACGCACACAAGCTCAACCTCAGAGACAACGACAGCCAAGTAAGTCCCGATCACCGAGTCCACCTCAGAGGAAAGGTCGTGGGAGTCCAAGTCGATCTCCTCCAGGCAGTCCACGAAGACGCCCCTCCGGCAGTCCACGAAGACGTCCTTCCGGCAGTCCACGAAGACGTCCCTCCGGCAGTCCACGAAGACGCCCCTCCGGCAGTCCACGAAGACGTCCTTCCGGCAGTCCACGAAGACGTCCTTCCGGCAGTCCACGAAGACGTCCCTCCGGCAGTCCAAGAAGACGTCCCAGCCCGCACCGGTCTACCAGTCCTCCGCAAAGAAAACGGCGGTCTAGCCCACCTCGGAGAAGACGCGAGCCATCTCGTAGTAAATCTCGGTCGGCCAGCCCCGCACAGAGAAGAGGCAGACCAAGTCCTCAGAGACAGAGCCCGCCGCAGAGGGCCAGGCTTGGCTCGCGGCAGTCCGCTAGTCCGCCAAGACGTCGCCAATCCAGTCCACCACAGAGAAGGCAGCGGCCTAGTCCAAGTAGATCAAGGTCGGTCAGTCCGAACCGTCGGCCGAACGAACGCAGACCGATGGCTAGTAGTGCAGACAGAAGAAAGCGCCAGCCTAGCAGAAGCCCCTCACCGTCCGGTAGTCCAGTTCGCCATTCAAAAGAGCGCAGATCATTTGCCAGTGCCGAGCAGCGAAATAAACAGACGAATAGAAGGTCTCGATCGGTCAGCCCACAACCTCAGTCGAAAGAACGTAGACCGGTGGCCCGTGGAAGAAGTCAGTCCAGCAAGAGTCAATCGCGCTCGGCCAGCCCTGTACGTGGTGTGGCCAGTGGTGATAGGAGAAAACGTCAGCCGAGCCGAAGCAGATCTCGGTCGGCCAGTCCGTCCCAAGCTCATCGTCCTGTGGCTAGTGCTGATAGAAGGAGGCGTCAGCCAAGCCGAAGTAGGTCTCGGTCAGTAAGTCCCGTTCGTCCGTCCCAAGGTCGTCGGCCTGTGGCTAGTGTTGGTGGGAGAAAGCGTCAGCCGAGTCGAAGTAAGTCCCGGTCGGGCAGCCCTGTTGGTCGTCGGTCCCAAGAACGTCGGGCTTTAGCCGGCCGAAAACGTCAGCCAAGCAAAAGTAGGTCTCGATCGGCGAGTCCTTCCCGTCGACCCGAAGAGCGTAGACCTGTGGCTAGTGCTGACAGGCGAAGGCGGCAGGCGAACCGAAGTGGATCCCGGTCCGTTAGTCCGCGACGGCCTATGGCCAGCAGTGCGGACCGCAGGAAACGTCAGCCTCGGACTCCATCGCCGGTTCCTGCTCGGGTGGCCAGTCGTTCCCGATCCGCAAGTCCGCCCGCACGCGGCAGACCGTCCCGCTCCCTCAGCGCGGAAAAGGCGAGGTCTTCCCCCTCCAGATCGCCCTCTGGCAGTCCAGCTGTTGAAAACAGGCGCCCTGATCAGAGATCGCCATCGGCCGCGAAGTCTGGAGACGACAGATACAGTCCTTCTCAACTTGTCACAACACCGCCAGCAGCAGTAGCTGAAGCAGCCGAAGAAAGCCCTCCCAAGTCCAAGTGGAAGCCGTTAGCCTCGGTCGCCCCAACCCCTCCGTCCCAAACTAAACAAGCTCCGCACAGAGGTCCCCATACCCCTCCAGGCTCACCTCGTAGAAAGGGACCTCGTACCCCATCGGTATCCCCACGTTCACAAAAGAAAGGCCCGCGGACGCCGTCCGGTTCACCCGCCTCCCGAAAGCGACATCCTCGAAGCCCCCAGCTGAGGGCTGCAAGCAGATCCCCCGTTCCGTCACCGACTCCGGAGAGAAAACCCCGTCGTAAAAAAGGGGCCCGTAGCCCTTCACCTTCCCCGCTCCCCAAAACGCAATCCGGGACCAAAAGCAAAAGACGCCGGAGTCCAACTCCAAGTCCTCCACGTTCACAAAAACAACATCCACGTAGTGCGTCGCGTTCACCCTCGCCCCGGCAACAACCCCCCAGCCCATCAGATTCACCCTCCACCAGCCCGGAAAAAGAGCAACCCTCGCCTTCTCCAAGTCCTCAGAGGCCGCCACCCCGCACCCGCTCCTCACCTCCAAAAAGGCGATCTAGCCCCCCGCGCTCGCAAAGTCCCCAAAGGAGACGACGTAGGCCTTCTGCAAGCCCCCCAAGAAGAgcacccccctccccaccccGTTCTCGCAGCCCCCCAAAACGCGGTCGTCCCAGTCCCTCGCCTAGCCCAAGGAGGAGAGCACGTCCCCAGAGCCCTGGGAACAAACGACGGCAAAGTCCCCGAAGGTCTTCCCAAGGTCAAATTCGCCGTATGTCTCCCGCTCGTAGCAAGTCCCCCAGACGTTCCTCAAAGACCACAAATGACCTGCACTCTCCCCAAGAATCCCGTGGCGTCCCGAGTAAAAAGCTTCAACGGAGTGCAGGCGAGAAGCAAAAATCCTCAAAACAAAAATCATCGCAACCGCAAGCGAAAAAGAAAGTGCAACCGGCTTCGGCCCAATCATCGTCGTCATCTTCCGAAGACAGCTCGAGCAGTTCCGACTCGAGTTCCGATTCAAGCTCGGACTCCGAGAGTGAACAATCGACCAATGAACGTCCGCCTGCGAAGAAACAGAAACTGAAAGCTTCGGACGAGAAGAGTTCTGCTCGAGGTCGAAAGGATAAGGGTCGTGAAATGAAACATCAAGAAAGAAGGGATGACAGTGAGAGGAGAGAGAAACGCGAGCAGATGAAGCCAAAGGGAAGAAAGGAGAAGGAAGCGAAGCTCTCGAAAAAGAAAGGAAAGATGGAGGgcaagaagaaaaaagaagtgtcgaaaaaagaaaagagcaAGAAAAATGAAAGATCGAAACACGGAAAGAATGCTTCGAAGTCGAAGGACAAATCTCGAAAACGTAAATCGAGGAAGAGTGAAAGCGAATCAAGCAGTGAAGAAAGTTCCAGTGGGTCCAGTTCAGAAGAGGTCAGTGGCAGTTCGAGCAGCTCAAGCAACAGCAGCGACTCTGTCGAATGATCCTCGTTAACGGTCGGTGAATGTTCGTACAACCTTCGTATGATGGCGACGTCACGTGCTATGTTGGTGTTTGTGTTTTGAGGCCTGTGAAATAGAACTGAAGTAACTTTTTTGCTGCGAGAAGTGTTTGCAAAGTACGAATACTGGTGGCGCCACAAATAACTTGGCGCGAATCTTACAATTATTCattaaaaagacaaaaatagTCTTGACTGAGAAATATTTGCTAAGACCCACACAGGCTATAGTGATTTGTCCACGTTTCGGGTTTTTATCTCGGCCGTATTTGTCGATcagtatgttttttttttgcaagaaatttgattttagCTATAGACTGACTGAAGGCAGTTGGAATTTTGCATAGATTTCAAAGATTTGCAAGAACTGTTTTTTCCTGTAGTTACCTATAGAGATTTAGCGATCTGAAAGGATTTAAAAATAagtgaagaaacaaaaatctatcgccacagttggaaacagcgtgtgaaaatttgtataactgcaaagtttgaggaagaaatattataaaatgggtTTATTATAGCCAGGCAAACTTTTATTGgccatttcccaatcgagcaaaggactgggtctagttgatgtttggagagattctcgtaccctgagcctgcgatcttcgtagGAGAATCGGTTCTTCcccgaagatcgcaggctcagggtacgagattggctAAACATATATTAAAAGATCAAAGATGCctataatttttgcatttcaggaCACACAAGGAACTTTAGGAAGTTTAAAAAACTTTAGGAAAACTTTACGATGTCATATTCGGcatatattgtttatttttttccctccaaaacaagcgactagacccagtcctctgctcgattcggaAATGGCTAATCAGCACAAGCAAAATCAACGCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UQ35	Serine/arginine repetitive matrix protein 2 OS=Homo sapiens OX=9606 GN=SRRM2 PE=1 SV=2
Q8BTI8	Serine/arginine repetitive matrix protein 2 OS=Mus musculus OX=10090 GN=Srrm2 PE=1 SV=3
Q9U213	SRRM2 protein homolog rsr-2 OS=Caenorhabditis elegans OX=6239 GN=rsr-2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003879 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08312 all species →	cwf21	cwf21 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000116 all species →	Family	High mobility group protein HMGA	Interproscan
IPR013170 all species →	Domain	mRNA splicing factor Cwf21 domain	Interproscan
IPR052109 all species →	Family	Serine/Arginine Repetitive Matrix Domain-Containing Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34755 all species →	SERINE/ARGININE REPETITIVE MATRIX PROTEIN 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13172	SRRM2, SRM300; serine/arginine repetitive matrix protein 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.