Gene detail

Detailed information of ENSAPQP00000008160.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028392771.1, transcription initiation factor TFIID subunit 4-like [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000009127

ATGGCGTCGTCGTTCATCGAAGATATACTTGGATCAGAAGTCGATGAAAAGGCCGTGAGCGCTTTCGTGGGCTCATTGGAAAGTCAGTTAGCGTCCCCGTCGGACGGCCGTTCGTCCGGTACCAATACGGCCAATAATTTGCCCCATTCACAGCGTTcaaatcaagtcccttcgtCCTCGGCTGCCAGCAATTCGAGTCAAAGTAACAATTCAAGTGTGGCCACAGTTATCAATATAAATACTGCAACAGGTTCAACAAGTGTTGCTGGCAAGTCATCGTATAACAACAATTCTCATTCGAGTACATCAACGCCAATAAACATCGCGCCAAGACCTGTTGTGACATCGGCTGTCTCACTCGCACCTAAAACGGTAACTTTACTATCTTCACAAACTGCAAATCGCGGCTATTTGCCAATGCAAACGACTGGTCTTGGGGTGCCATTAATGATGGGTCAAGTGAGGGGACCAATACCTCAGGCTCCTAGACTGGTATCAACTGCTATGTCTCTACCAAGGACCAATGTACCACAAAATACAGTTCATAAACTTTCACCACAAATTCATAGTATGCAGCAAACTGGGGCAGTGCAAAGGATTGCTGTTAATCAGGAAGCGAAGAACCTGTTAAAACAGTCCCCTGCATTGTTAAACAATAACCTGCGTATGCATACACCATCACCTGGAAAACCTGTACAGAACCATGCAATGGTTATAAAGAGCGAACCGAAATTGGTCACAAATCATGTGCCGCATAGTGTAGCAATTAAGTCCGAACCTTCAAATACAGTCGTTACTCAGCACAGCAGTACGGCAGCTGTGCAAAACCGTGCGACAACTCAAGCGCAAGTTAATCGTGTAAAAGAACAGGTTATGAAGTTACAAAGTTTCTTTTCAAAGTTAATAATTCTAGCAACCCAACAATCACGAGAGATTGGAGAAGCTGTTCAGGAGCTTATAAAAGCTGTCATGGAAAATAAATTAACAGAGGAAGATTTCACcacaaaacttgaaaaaacttTGCAATCTCCTTCACAACCTAACCTTGTTCATTTCTTAAAGGTATGTAGATTTTGGGTAGCAAAGACAGCAACAAAGGCGCCTATAGAACACCCTTCCACTGATTCCGTTTATCTTGCGCAGGTACAACCAGCGGTCGTGAACAAAGCTCGCATAAAACCCGCACCAACGTCAGCGCCACAACAAATCGTTCTCAATCAGCACACTTTCTCGCAACTCACTCCGCAACAACGACAACGCATTCTATCGCAACATCCTGGGCTGCAACAGCTGTTTCCTAAAGCTCAAATaatatactactatactacTATGTATTGGGACGAGAATCCGCTGACCTTTACTACACCAGCTAGGTTGTATATACAACTCGCGGTGACAACTCACTTTCTGGTTATTTTTTTTGCTAGTGGTAACGATGACGACATCAATGACGTAGCGTGCATGGCTGGAGTGAATTTACAGGAAGAGCAGTCTAAAATTCTCGCAACGAACTCCGAAATCTTGAACCTACAGCTTCGAAGTTGTAAGGATGCGTTCTTTTTGAATAACAAGGTTTTGCAAAAGCAAATCGAAGATATTGGTAAGTTTACAACTTTCTTGGGCTCGAATATCTGTGGCTTAGTGTCTCATGCGACGCAGGAACGTCTTACGAACATCATGGAAAAGTTGTCGATTTTCAGTCTACATCGACTGGAAACGATGAAAGATGATCCAACTTATCAAACGTCGTCCGATGTGAAATCCCAGCTTCgagtttttgaacaaatcGATGAGATCGAGAGACGAAAACGAGAAGCGAGGGAAAGAGAAGTTTTAATACGAGCCGCTAAGAGTCGTTCAAGACAAGAAGATCCCGAGCAAGCGAGATTGAAGGAGAAAGCAAAACAGGTAGGTGTACCATGTGGCATTAGGTGGAAGGGTACACCCCAGTGTGGCAGTAACGGCAACAAGATATTACCTTTCCCAATCCCCACCGTCACCCCCCCCCTTCCCTGCTTGCCAAAAACCTGCTGGATCAGTGTTGTTTTTCTCACCTCTTCAAGGCACAATGAGCCCCAACAAGGTTTCCTTTttcacaacctcgtacccaggctcttcgatctgacgctcgtacctcgctCAGAACgaagcgtcagaacgaagagcctgggtacgaggtttcCTTTTTCACTGTTTCAGCTCCAACTCGAAGAAGAAGAGACGTTACGAAAGCGTGCTGCGAATAAGACGGCTTTGGACGCCATTGGACCGCGAAAGAAACGAAAACTCGACGATGCTCTAAGCACCGAGGTAATCCACCAAAAGATTGCTGGGTTTTGTCTATTGAAGTTCAAGGCATCCTGTGCACGGTTTTCCGATCGGGTGAAGTGGGACgctaattatgctaattatgtTGAATTGTGTGTTTTTCAGGGATCCCCTGGTACAAGTACAGGCCCTGGTGCAAATGCAACAACCAGTGTTCGAAGTCAGGTAGAGGCTCCTTTCTCCCTGAATAAACTCTTTATTTCCCAGTTCACTTGTTTGTTGGTTTACGTGCAGacatgtttgtttgtttttagcttgcttgttttttttctttttgcccACTTGTCTTTTTTCCTCCTTGCAAATCTGGTTGTTCATCCATTTTCCAGTTTCCACGTCAAAGAACGCGCCGTGTCGTCCTCAAAGATCTGTTACTCATCATGGAACAGGAAAAAGAACTGTGTAATTCAAAACTCTTGTATAAAGCTCTCATGA

Transcript

ENSAPQT00000009127

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00268	Transcription initiation factor TFIID subunit 4 OS=Homo sapiens OX=9606 GN=TAF4 PE=1 SV=2
Q92750	Transcription initiation factor TFIID subunit 4B OS=Homo sapiens OX=9606 GN=TAF4B PE=1 SV=2
P47825	Transcription initiation factor TFIID subunit 4 OS=Drosophila melanogaster OX=7227 GN=Taf4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005442 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05236 all species →	TAF4	Transcription initiation factor TFIID component TAF4 family	Family	Interproscan
PF07531 all species →	TAFH	NHR1 homology to TAF	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037249 all species →	Homologous_superfamily	TAFH/NHR1 domain superfamily	Interproscan
IPR003894 all species →	Domain	TAFH/NHR1	Interproscan
IPR045144 all species →	Family	Transcription initiation factor TFIID component TAF4	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR007900 all species →	Domain	Transcription initiation factor TFIID component TAF4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15138 all species →	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000008160.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.