Gene detail

Detailed information of ENSAPQP00000008171.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028392771.1, transcription initiation factor TFIID subunit 4-like [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000009140

ATGGCGTCGTCGTTCATCGAAGATATACTTGGATCAGAAGTCGATGAAAAGGCCGTGAGCGCTTTCGTGGGCTCATTGGAAAGTCAGTTAGCGTCCCCGTCGGACGGCCGTTCGTCCGGTACCAATACGGCCAATAATTTGCCCCATTCACAGCGTTcaaatcaagtcccttcgtCCTCGGCTGCCAGCAATTCGAGTCAAAGTAACAATTCAAGTGTGGCCACAGTTATCAATATAAATACTGCAACAGGTTCAACAAGTGTTGCTGGCAAGTCATCGTATAACAACAATTCTCATTCGAGTACATCAACGCCAATAAACATCGCGCCAAGACCTGTTGTGACATCGGCTGTCTCACTCGCACCTAAAACGGTAACTTTACTATCTTCACAAACTGCAAATCGCGGCTATTTGCCAATGCAAACGACTGGTCTTGGGGTGCCATTAATGATGGGTCAAGTGAGGGGACCAATACCTCAGGCTCCTAGACTGGTATCAACTGCTATGTCTCTACCAAGGACCAATGTACCACAAAATACAGTTCATAAACTTTCACCACAAATTCATAGTATGCAGCAAACTGGGGCAGTGCAAAGGATTGCTGTTAATCAGGAAGCGAAGAACCTGTTAAAACAGTCCCCTGCATTGTTAAACAATAACCTGCGTATGCATACACCATCACCTGGAAAACCTGTACAGAACCATGCAATGGTTATAAAGAGCGAACCGAAATTGGTCACAAATCATGTGCCGCATAGTGTAGCAATTAAGTCCGAACCTTCAAATACAGTCGTTACTCAGCACAGCAGTACGGCAGCTGTGCAAAACCGTGCGACAACTCAAGCGCAAGTTAATCGTGTAAAAGAACAGGTTATGAAGTTACAAAGTTTCTTTTCAAAGTTAATAATTCTAGCAACCCAACAATCACGAGAGATTGGAGAAGCTGTTCAGGAGCTTATAAAAGCTGTCATGGAAAATAAATTAACAGAGGAAGATTTCACcacaaaacttgaaaaaacttTGCAATCTCCTTCACAACCTAACCTTGTTCATTTCTTAAAGTCAACACTACCATTTCTACGTATGGCAAAGCAACAGAATACAGTAGCGGCAGCTCCAGCTGTTACCCCTGTAGTACGGCAGGTTCAAAAACCTGTCCAGTCTGTGGCAGTTGTTAGTAAATCTCAACCCACCATCTTACCATCAACCCAACTCAATCGACAGGTACAACCAGCGGTCGTGAACAAAGCTCGCATAAAACCCGCACCAACGTCAGCGCCACAACAAATCGTTCTCAATCAGCACACTTTCTCGCAACTCACTCCGCAACAACGACAACGCATTCTATCGCAACATCCTGGGCTGCAACAGCTGTTTCCTAAAGCGCAAATGACAAGCTCGAAACCTGGCGTCGTATTAATATCGTCTCAAGCTGCGAATCAGGTAGCTACGGCGCATGCCACGAGTGTCGTGAAACTCCAACCAACAACGCCAAGCAGCGCACCGCATGCGCAGGCGCAGGATAAATCGAAGGCAAGACCGACGTCATCGATATCTGCTGTCACCAGTGGTAACGATGACGACATCAATGACGTAGCGTGCATGGCTGGAGTGAATTTACAGGAAGAGCAGTCTAAAATTCTCGCAACGAACTCCGAAATCTTGAACCTACAGCTTCGAAGTTGTAAGGATGCGTTCTTTTTGAATAACAAGGTTTTGCAAAAGCAAATCGAAGATATTGCGAAAAAGCATGGTGTCGGTAGCTTGGGCTCGAATATCTGTGGCTTAGTGTCTCATGCGACGCAGGAACGTCTTACGAACATCATGGAAAAGTTGTCGATTTTCAGTCTACATCGACTGGAAACGATGAAAGATGATCCAACTTATCAAACGTCGTCCGATGTGAAATCCCAGCTTCgagtttttgaacaaatcGATGAGATCGAGAGACGAAAACGAGAAGCGAGGGAAAGAGAAGTTTTAATACGAGCCGCTAAGAGTCGTTCAAGACAAGAAGATCCCGAGCAAGCGAGATTGAAGGAGAAAGCAAAACAGCTCCAACTCGAAGAAGAAGAGACGTTACGAAAGCGTGCTGCGAATAAGACGGCTTTGGACGCCATTGGACCGCGAAAGAAACGAAAACTCGACGATGCTCTAAGCACCGAGGGATCCCCTGGTACAAGTACAGGCCCTGGTGCAAATGCAACAACCAGTGTTCGAAGTCAGTTTCCACGTCAAAGAACGCGCCGTGTCGTCCTCAAAGATCTGTTACTCATCATGGAACAGGAAAAAGAACTGTGTAATTCAAAACTCTTGTATAAAGCTCTCATGAAATAA

Transcript

ENSAPQT00000009140

GATTAATCCGATGTTAATAATCCACGACCGGGATTATTTACCTATGTCCACATACAACCCGGTCGAACGTCGAACGTCATCAATTTCAACCAATGAGAATCGTCGATGATTGGATGCGCGCGCACAGATAtcccatgatgatgatgtgtGCGTTTTTAATGGCATAGTTCAAGATTGGAGTGTTTAGTATGGCGTCGTCGTTCATCGAAGATATACTTGGATCAGAAGTCGATGAAAAGGCCGTGAGCGCTTTCGTGGGCTCATTGGAAAGTCAGTTAGCGTCCCCGTCGGACGGCCGTTCGTCCGGTACCAATACGGCCAATAATTTGCCCCATTCACAGCGTTcaaatcaagtcccttcgtCCTCGGCTGCCAGCAATTCGAGTCAAAGTAACAATTCAAGTGTGGCCACAGTTATCAATATAAATACTGCAACAGGTTCAACAAGTGTTGCTGGCAAGTCATCGTATAACAACAATTCTCATTCGAGTACATCAACGCCAATAAACATCGCGCCAAGACCTGTTGTGACATCGGCTGTCTCACTCGCACCTAAAACGGTAACTTTACTATCTTCACAAACTGCAAATCGCGGCTATTTGCCAATGCAAACGACTGGTCTTGGGGTGCCATTAATGATGGGTCAAGTGAGGGGACCAATACCTCAGGCTCCTAGACTGGTATCAACTGCTATGTCTCTACCAAGGACCAATGTACCACAAAATACAGTTCATAAACTTTCACCACAAATTCATAGTATGCAGCAAACTGGGGCAGTGCAAAGGATTGCTGTTAATCAGGAAGCGAAGAACCTGTTAAAACAGTCCCCTGCATTGTTAAACAATAACCTGCGTATGCATACACCATCACCTGGAAAACCTGTACAGAACCATGCAATGGTTATAAAGAGCGAACCGAAATTGGTCACAAATCATGTGCCGCATAGTGTAGCAATTAAGTCCGAACCTTCAAATACAGTCGTTACTCAGCACAGCAGTACGGCAGCTGTGCAAAACCGTGCGACAACTCAAGCGCAAGTTAATCGTGTAAAAGAACAGGTTATGAAGTTACAAAGTTTCTTTTCAAAGTTAATAATTCTAGCAACCCAACAATCACGAGAGATTGGAGAAGCTGTTCAGGAGCTTATAAAAGCTGTCATGGAAAATAAATTAACAGAGGAAGATTTCACcacaaaacttgaaaaaacttTGCAATCTCCTTCACAACCTAACCTTGTTCATTTCTTAAAGTCAACACTACCATTTCTACGTATGGCAAAGCAACAGAATACAGTAGCGGCAGCTCCAGCTGTTACCCCTGTAGTACGGCAGGTTCAAAAACCTGTCCAGTCTGTGGCAGTTGTTAGTAAATCTCAACCCACCATCTTACCATCAACCCAACTCAATCGACAGGTACAACCAGCGGTCGTGAACAAAGCTCGCATAAAACCCGCACCAACGTCAGCGCCACAACAAATCGTTCTCAATCAGCACACTTTCTCGCAACTCACTCCGCAACAACGACAACGCATTCTATCGCAACATCCTGGGCTGCAACAGCTGTTTCCTAAAGCGCAAATGACAAGCTCGAAACCTGGCGTCGTATTAATATCGTCTCAAGCTGCGAATCAGGTAGCTACGGCGCATGCCACGAGTGTCGTGAAACTCCAACCAACAACGCCAAGCAGCGCACCGCATGCGCAGGCGCAGGATAAATCGAAGGCAAGACCGACGTCATCGATATCTGCTGTCACCAGTGGTAACGATGACGACATCAATGACGTAGCGTGCATGGCTGGAGTGAATTTACAGGAAGAGCAGTCTAAAATTCTCGCAACGAACTCCGAAATCTTGAACCTACAGCTTCGAAGTTGTAAGGATGCGTTCTTTTTGAATAACAAGGTTTTGCAAAAGCAAATCGAAGATATTGCGAAAAAGCATGGTGTCGGTAGCTTGGGCTCGAATATCTGTGGCTTAGTGTCTCATGCGACGCAGGAACGTCTTACGAACATCATGGAAAAGTTGTCGATTTTCAGTCTACATCGACTGGAAACGATGAAAGATGATCCAACTTATCAAACGTCGTCCGATGTGAAATCCCAGCTTCgagtttttgaacaaatcGATGAGATCGAGAGACGAAAACGAGAAGCGAGGGAAAGAGAAGTTTTAATACGAGCCGCTAAGAGTCGTTCAAGACAAGAAGATCCCGAGCAAGCGAGATTGAAGGAGAAAGCAAAACAGCTCCAACTCGAAGAAGAAGAGACGTTACGAAAGCGTGCTGCGAATAAGACGGCTTTGGACGCCATTGGACCGCGAAAGAAACGAAAACTCGACGATGCTCTAAGCACCGAGGGATCCCCTGGTACAAGTACAGGCCCTGGTGCAAATGCAACAACCAGTGTTCGAAGTCAGTTTCCACGTCAAAGAACGCGCCGTGTCGTCCTCAAAGATCTGTTACTCATCATGGAACAGGAAAAAGAACTGTGTAATTCAAAACTCTTGTATAAAGCTCTCATGAAATAACGCCATTTCTATATCACAATCATCATCTCATCATCTTGTATCAAGGAGTCGTATGTGCAAAAACTGCGTCGAATATAAGGTAACAACTGAACACGTACCACGACGAGAAGCATCTTGTGGATTTTTAGTTCGAGAATACTTAgacaatgaaatgtttttcaatgaaCATTCTATTACAATGACCAGAATTACATTTGAGTTTTTCCGTCTTGAATTGCTCCAGGTCTCGCTCGAACTGTTTTCGTTTTTGATACACTCAAGCGTAGATGCAAACTCGTGCCCAGGGACGTTGCTCTAGAAGACGAAAAAGATGAAAACCAATTGGAGCGAGACTTGTAGTAACATCCCAAAttacaacctcgttcccaggctctttgcaaCGAGGTTGCTTAAATTATAAGTGCACATGATGCTTCCATTCagattatttttatatatcgTGGTATAAAATAGAGTATTGTACAAATCTGAGGTTTAAATGCACAAAAATCTCGAATGTAATTGTAAATTCTAAAAACTTGTGCAAAGGTTCCATTAAATGGAATGGAAATGATACAAACATTGTTCGAAGTATCGTTAGAAATGacgaaataaagaaaatgtataaaattataGTGAAAGTCACGGGTGTTTGATGAAGACGTGAAAAAGCCCTTGCTCTTACAGGCATGCAACAAGTTTGTTGCACTACTTGTTACCAGCTGTTGTGACAAGGTACGGGATCGCCTTGCTATGCTATTCGTCAACTGCTGGGAACAAGCATTGCGAATACATCCTGATGTTGGCTTGACAACGGCCCACAAATGCCCGGTTGCACAACGGGAAAAAATTAGACCGGTCCGTTGGTCCAATCAATTCATCATTCTCCATCGACATTGGACCTCTCAATTAAGGGTTGCTGTACCATGACATGTTCCTCCTAATCACGCACAGTTACAGCGTAAAACATTTACGCTATATCCATTCCTTTACCAAAGCTTTTTTGCACTCCGTTGTCCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00268	Transcription initiation factor TFIID subunit 4 OS=Homo sapiens OX=9606 GN=TAF4 PE=1 SV=2
P47825	Transcription initiation factor TFIID subunit 4 OS=Drosophila melanogaster OX=7227 GN=Taf4 PE=1 SV=1
Q92750	Transcription initiation factor TFIID subunit 4B OS=Homo sapiens OX=9606 GN=TAF4B PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005442 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05236 all species →	TAF4	Transcription initiation factor TFIID component TAF4 family	Family	Interproscan
PF07531 all species →	TAFH	NHR1 homology to TAF	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045144 all species →	Family	Transcription initiation factor TFIID component TAF4	Interproscan
IPR007900 all species →	Domain	Transcription initiation factor TFIID component TAF4, C-terminal	Interproscan
IPR003894 all species →	Domain	TAFH/NHR1	Interproscan
IPR037249 all species →	Homologous_superfamily	TAFH/NHR1 domain superfamily	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15138 all species →	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03129	TAF4; transcription initiation factor TFIID subunit 4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.