Gene detail

Detailed information of ENSAPQP00000008287.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3988340.1, disintegrin and metallo ase domain-containing 10-like [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000009263

ATGATTGCTCTCAGACTATTTTCGTGGTTGCTCTTTTTTCAAGTCTTATTTTTGCTAATAGTCAATACAGATGGAAAATTAACAGATGACTCACTAGATTTCGTCACTTACTACGAAATTACAAAGGTTGATATTCGTATCTTAGGCAATACCGGAGGCGAAAAAGGATCAAATAAAGCTGGAGTATTGCTCCATCTTAGTGCTTTTAATAGAACATTTTCGGCAATGCTGTGGCCTGACAATAGAGTATTTCAAAGTAATGTTCAAATCAAGATCATTTCCAAACAtaaagaaaacactaaatgGCTATCAGATAATCTTATTTACGAAGGCCAACTTCAAGGTGAGGAAAAGTCGCGAGTATCTGGGTATTTTACACAAGGACAATTTCATGGTCAAATATCTGTACAAGATACAGAGACGTTTTATATTGAAGAACTAGGAACACGTTTAAATAAAAGCAACGATACTCACATCATATACAGAGAAAGAGATATTTTAGAGAACTTAACTTCATGTACTCATACATACAGTGGGCCTCATACAAGAGACCAGGCGACTAAACGCAAGCGAGTCAAACGTCTATCATCGTATTATAACAGTTGTCCTGTTTTGATAGCAGCTGACAATATGTTTTATAAATACGTTGGTAAAAGTAGTGTATCAACGACCTTAGCTAAGATGGCGTATTACACATCTGAAGCAGATAAGATTTTTCGACGTACAAGATTTTTTGAAGAACATGACGAAACTATTGGAGTAGTGATCGCGTCCTTAGTAATCTACGAAGATCAGCAATCACAGGGTATATTTTCTTCTGCAACTGATATTCCTATCAACAAATACCTCAAAAGCTGGAGTAAAATAAACCACGAATCTTACTGCCTCAGTTTATTGCTGACCTACCGAGACTTTGCTAAAGGAGTGCTAGGTCTTGCATGGCTAGCAGAAATAAACACGTTAGGTGGAATCTGTGAATCATGGAACAAACACTACAGTATGTCATTTAATACGGCCGTAGTAACATTTCTCAATCACGGAAGAATGATTGGAGACAGAACAGCAACACTCACCATAGCTCATGAATTTGGTCATGGCTTTGGAGCTCAGCATGATCCCAAGGAATGTCAGCCTGGTGGCAACGAAGGCAACTATatcatgtttgaacattctaGTGATACGGCACACTCAAACAACGACAAGTTCTCACCATGCAGTCTCAACGACATGAAACAAATACTTGAAGCAAGAGCACACGAGTGCTTCACAGACGGTCGTTCATATTGCGGCAATGAGATCGTGGAGACAGGCGAACAGTGTGACTGTGGAGACAGATCTGACTGTCACATGCAGGATCCTTGTTGTGTTGCAAAGGATGACGGTGTTCATGGATGTAGGCTCAAGTCAACAGCACAATGTAGTCCAAAAGCAGGAGCATGTTGTACGAATGAGTGCAAATTTATCAATGACACAGAGAAACAAGTTTGCCAAGAAGATACAGAATGTTCTTTTGCATCTTATTGCAAGAATGGTACATGTCCCAAAGCGAGGCATAAGCCTGACAACAGAATTTGTAACAACGCTTCAAATGTGTGCGAAAATGGTGAATGCAAAGGTTCCATTTGCTCTTACTATGGCCTCACACAATGTCCATGCAGTGAAATGGGATATTTGTGTCAAGTGTGTTGTAATACTACTGTGGGTGAATGTGTCCCTTCATCTCAGTTCACAGGAAGTATTTTAGTGTTGCCTGATAAGACGCCATGTGGTCACAATATGTTCTGTGATAACATCGGCCAATGTGCACAACATATGGAccaaaattatgaacatcaaGATGCACTTAACATCATTATTTCTTGGTTAAAAAACAAATGgtATCTATTTATGTTCATTGCTATAGCAACAGCAACAAAGATAACCTTTCTAAGTTACTATGGATACAGACATTGGTGTGTAAATAGAGCAGGACGTCATGATGCACAAGCTGAAGGACTGGGAATGCAACAGTTGAATCAGCCAACTCATTCATGA

Transcript

ENSAPQT00000009263

AGACAATTGTTGCATACGTCAGCAgtagaaatttgaaaaattagaaatttttttGGTTGTTGTTTCAAGATTTGAAATGATTGCTCTCAGACTATTTTCGTGGTTGCTCTTTTTTCAAGTCTTATTTTTGCTAATAGTCAATACAGATGGAAAATTAACAGATGACTCACTAGATTTCGTCACTTACTACGAAATTACAAAGGTTGATATTCGTATCTTAGGCAATACCGGAGGCGAAAAAGGATCAAATAAAGCTGGAGTATTGCTCCATCTTAGTGCTTTTAATAGAACATTTTCGGCAATGCTGTGGCCTGACAATAGAGTATTTCAAAGTAATGTTCAAATCAAGATCATTTCCAAACAtaaagaaaacactaaatgGCTATCAGATAATCTTATTTACGAAGGCCAACTTCAAGGTGAGGAAAAGTCGCGAGTATCTGGGTATTTTACACAAGGACAATTTCATGGTCAAATATCTGTACAAGATACAGAGACGTTTTATATTGAAGAACTAGGAACACGTTTAAATAAAAGCAACGATACTCACATCATATACAGAGAAAGAGATATTTTAGAGAACTTAACTTCATGTACTCATACATACAGTGGGCCTCATACAAGAGACCAGGCGACTAAACGCAAGCGAGTCAAACGTCTATCATCGTATTATAACAGTTGTCCTGTTTTGATAGCAGCTGACAATATGTTTTATAAATACGTTGGTAAAAGTAGTGTATCAACGACCTTAGCTAAGATGGCGTATTACACATCTGAAGCAGATAAGATTTTTCGACGTACAAGATTTTTTGAAGAACATGACGAAACTATTGGAGTAGTGATCGCGTCCTTAGTAATCTACGAAGATCAGCAATCACAGGGTATATTTTCTTCTGCAACTGATATTCCTATCAACAAATACCTCAAAAGCTGGAGTAAAATAAACCACGAATCTTACTGCCTCAGTTTATTGCTGACCTACCGAGACTTTGCTAAAGGAGTGCTAGGTCTTGCATGGCTAGCAGAAATAAACACGTTAGGTGGAATCTGTGAATCATGGAACAAACACTACAGTATGTCATTTAATACGGCCGTAGTAACATTTCTCAATCACGGAAGAATGATTGGAGACAGAACAGCAACACTCACCATAGCTCATGAATTTGGTCATGGCTTTGGAGCTCAGCATGATCCCAAGGAATGTCAGCCTGGTGGCAACGAAGGCAACTATatcatgtttgaacattctaGTGATACGGCACACTCAAACAACGACAAGTTCTCACCATGCAGTCTCAACGACATGAAACAAATACTTGAAGCAAGAGCACACGAGTGCTTCACAGACGGTCGTTCATATTGCGGCAATGAGATCGTGGAGACAGGCGAACAGTGTGACTGTGGAGACAGATCTGACTGTCACATGCAGGATCCTTGTTGTGTTGCAAAGGATGACGGTGTTCATGGATGTAGGCTCAAGTCAACAGCACAATGTAGTCCAAAAGCAGGAGCATGTTGTACGAATGAGTGCAAATTTATCAATGACACAGAGAAACAAGTTTGCCAAGAAGATACAGAATGTTCTTTTGCATCTTATTGCAAGAATGGTACATGTCCCAAAGCGAGGCATAAGCCTGACAACAGAATTTGTAACAACGCTTCAAATGTGTGCGAAAATGGTGAATGCAAAGGTTCCATTTGCTCTTACTATGGCCTCACACAATGTCCATGCAGTGAAATGGGATATTTGTGTCAAGTGTGTTGTAATACTACTGTGGGTGAATGTGTCCCTTCATCTCAGTTCACAGGAAGTATTTTAGTGTTGCCTGATAAGACGCCATGTGGTCACAATATGTTCTGTGATAACATCGGCCAATGTGCACAACATATGGAccaaaattatgaacatcaaGATGCACTTAACATCATTATTTCTTGGTTAAAAAACAAATGgtATCTATTTATGTTCATTGCTATAGCAACAGCAACAAAGATAACCTTTCTAAGTTACTATGGATACAGACATTGGTGTGTAAATAGAGCAGGACGTCATGATGCACAAGCTGAAGGACTGGGAATGCAACAGTTGAATCAGCCAACTCATTCATGAAACAAGGATTTTAAATGTAGAAAAAGTGAATGAAATGAGAacaagaaatgagaaaaatgaaattccGTTGACCATATTTATCAAAACTAAGTTTACCGTATGTTTGCAGCATGCACAAGTGTCGAACCATACATCACATAAATAGTATCgaacataaaaaaattctcttACCTCTCACTCCTGCAGCATTCTATATTCCATCTATTCCATCCAAATATCCACTGATAATCGATATCAAACATCAGTAATAAGCCATATACCAAGAGTAATCCAGTAAAACCAAAAGTAATCCAGTATAACCAAGAGTAATCCAGTATAACCAATAGAGATGTATTGTCTTAATAAGTATTGTCAATTAAATACTTGTAACAATGATGATACCATGGTTGATAATTTAGCAGCCAGATAAAACAAGGTTATCATAGGACTGAACTTGTTCCACTGAGAGTGATGGTGAAGTGGAACACAGTGCTgccatgaaatgtttttgttcaaCGTGAGAAGATTTCTCAATGCCCAAATCTTGTAAAGCATTCAGTGCTGCCTGAAAGAcaccaattttgaaaaatccctcttaagaattataaaattccttaattttccccaaagtaggtgaattctgacaatagtttttatattggcaaaaaccgaaacgatgcagaattcctgtgtTTAAGGATAGATATAGAataaatccaatatggcggcgCTGGtgcgaaaaatccttcgtaagaattataaaattccttaattttccccaaagtaggtgaattctgacaatagtttttatattgggaaaaaccgaaaccatgcagaattcctgttttcaaggattgttatagaataaatgtcac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5EFD9	Disintegrin and metalloproteinase domain-containing protein 10 homolog OS=Caenorhabditis elegans OX=6239 GN=sup-17 PE=1 SV=1
Q94316	Disintegrin and metalloproteinase domain-containing protein 17 homolog OS=Caenorhabditis elegans OX=6239 GN=adm-4 PE=3 SV=1
P0DM89	Zinc metalloproteinase-disintegrin-like brevilysin H2a OS=Gloydius brevicauda OX=3148161 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000695 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13574 all species →	Reprolysin_2	Metallo-peptidase family M12B Reprolysin-like	Domain	Interproscan
PF16698 all species →	ADAM17_MPD	Membrane-proximal domain, switch, for ADAM17	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032029 all species →	Domain	ADAM17, membrane-proximal domain	Interproscan
IPR036436 all species →	Homologous_superfamily	Disintegrin domain superfamily	Interproscan
IPR001762 all species →	Domain	Disintegrin domain	Interproscan
IPR051489 all species →	Family	Disintegrin and Metalloproteinase Domain-Containing	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45702 all species →	ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006509 all species →	Biological Process	membrane protein ectodomain proteolysis	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06704	ADAM10, CD156c; disintegrin and metalloproteinase domain-containing protein 10	EC:3.4.24.81	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.