Gene detail

Detailed information of ENSAPQP00000008947.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3989256.1, pyridoxal 5 -phosphate synthase subunit SNZERR-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000010048

taaacaaaatatttttcaaaacacagTAAAATGCGTCAAATTTGATgggtttttaaatatttattctttattccaggccttttattttgatttatttgttaatttctcatgttggttgataaatatatcttgttttttatgctttaggaatagaAACCCAACTCGGGTAGCGGAtgtaagagcctgggtacgaggttgcgaTTTATCGAATCGAAGTAACAAATTGAAGTAACCTGACATTCAGAGGTTAGGGTTCCcgtatttgaaatttcaaggCTGCAAACATGCAAAACCATTGTGGTGCTGAAGTTGACAGCGTTGCAAATCTGTCAAAGaataatataaacaaagaTCATCTCGTGAAAAGTGATTTACTTCACCATACAGGAACATTCAAAGTGAAGTCAGGATTTGCTCAGATGGCAAAAGGAGGCATTGTGATGGATGTAGTGAATGCTGAACAAGCAAAAATTGCAGAAGCTGCAGGGGCATGTGCGGTGATGGCATTAGAACGAGTGCCTGCAGACATTCGAAAACAGGGTGGAATTGCAAGAATGTCTGATCCCAAGATGATCAAGGAAATCATGGCTGCAGTCACAATCCCAGTCATGGCCAAAGCTCGTATTGGACATTTTGCTGAGGCCCAGATCTTGCAGGAGTTAGGAGTAGATATGATTGATGAGTCAGAAGTTCTAACTCCAGCGGACTACAGTCACCACATTGACAAACATCCATTTAAAATTCCATTTGTGTGTGGTGCTCGAAACTTGGGTGAAGCATTGAGAAGGATAGAAGAAGGTGCAGCTATGATTAGAACCAAAGGAGAAGCAGGAACAGGCGATGTTGCTGAGGCAGTGAGACATGCTAGACATATCAATAGTGAAATCAAGCGAGCCCAAACAATGGATACAACTGAGCTCTATAGTTATGCTAAAGAACTTCAAGTCTCTTTTCAACTTCTCAAGAAGACAGCTGAGTTGGGACGATTGCCTGTTGTGAACTTTGCTGCTGGTGGTCTGGCGACCCCAGCAGATGTTTCATTGCTCATGCAACTTGGTGTTGATGGAGTGTTTGTGGGTTCAGGCATATTTAAGAGTGGGAACCCAACGAAGCGAGCACATGCTATGGCGCAAGCAGTCACACACTATGATAAACCTGCAAAAATTGCCGAGCTCAGTGAGGATCTTGGTACACCTATGTCAGGACAACCTGTCACAGATGAGACTAGAATCTTCAGTCATAAATAGACATGTATCTGTCCAGTTAAAATAGTCAGCCCATTGCTTCTCAAAGTCATGATTATCTTTTGCTTATAAAAGTCTCAAAGAGCCTTTTTTGTTTTGCTGTGTTACGCTGAAATTTGCACTTTGAGAAATTTAAACTTCATTGGATCAATTCATTGGTCAAACTTTATTCTCTTTTATTCACCATCATATATGTTACATCTATGATTGAGgattgaattactctggacAGCTCTATGCTAATATTTGCGAGTAGTGGTTGTTGTGTGTCATTTTCCAAAGAAAACTCGATGTCTTAACATGTGCATTTGCACAGGCATTTGTTTCATGCCCGTGGTATGATTATCGCTGGTTGCCATATCGGCAACTCTTGCGTTGACACGTGCGAGCATTTGCATGATGTCTTCATGCTGTCTTCTTTCTTGAAATACTTGAGCAAGAGCACTGATCAACCATGTTCCTGTACCGGGACTGCTCGTTACATCCAGGGTAAATCTTCGGTGGGAAAGATAACCTTTAGTCGTCGAGTAACAAACCAAGAAATCTGCTTCGGTTGGAAGTTTCGGTACTAACTTCTCGTCCCCACCTGCGTCAGAGTCGATGACACCAGATACCCCAGGATCTGGCTTACTGCCCCGACACGCAGAGATGAAGAATAATTTTGGTTTTCCCCGCAGACCGGCGCACTGTTTCCCGTTCACTCGTGACGTGAGCTCGTCAacttcaacaatttttttatccaCGGCTTGAAATCCTTTTGGTTTCCCATGGCTGGAGATAAAAACTACCAGACCGTCATGGTTTGCTGGAGTGGAGAAATTTAAAACACAAAGTGTGAAGCAGATAAAACACACAGTAGTGTTGGAATGAATGGATAACATATAGTTCCGTTGCCAGGGTACCTACCAATTTCTGGAgaattggaaatattttccatgATTTCCAATGTATCATTCCGTCTTTGATTGCAATGAATATGAACACTGTTAAATCCTGCACTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WPW2	Pyridoxal 5'-phosphate synthase subunit SNZERR OS=Suberites domuncula OX=55567 GN=SNZERR PE=2 SV=2
Q54J47	Probable pyridoxal 5'-phosphate synthase subunit pdx1 OS=Dictyostelium discoideum OX=44689 GN=pdx1 PE=1 SV=1
O14027	Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=snz1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006083 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01680 all species →	SOR_SNZ	SOR/SNZ family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001852 all species →	Family	Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ	Interproscan
IPR011060 all species →	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR033755 all species →	Domain	PdxS/SNZ N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31829 all species →	PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042819 all species →	Biological Process	vitamin B6 biosynthetic process	Interproscan
GO:0042823 all species →	Biological Process	pyridoxal phosphate biosynthetic process	Interproscan
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0008615 all species →	Biological Process	pyridoxine biosynthetic process	Interproscan
GO:0016843 all species →	Molecular Function	amine-lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06215	pdxS, pdx1; pyridoxal 5'-phosphate synthase pdxS subunit	EC:4.3.3.6	Vitamin B6 metabolism	ko00750	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.