Gene detail

Detailed information of ENSAPQP00000009048.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4029711.1, PHD finger 20 1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000010162

ATGTCGGTGAAATCGAGTGCATCTTCGAGCCCGTGTTCAAGCAAGGATAACTCACCCAATAAACTTGAGTTTGTTGTTGGAAATCGTCTTGAAGCGATGGATTATATGTGTAACTGGTATGTGTCAAAAATTGCAAAGGTTGATCACAAGAGGAGGAAAATATTGATCCATTTTGAAGGCTGGAACTCTCGATACGATGAGTGGGTTTCATTTGAGAGTAAAAAAATCAGAGCTTTGCCAAAGGAAAAAGTAAAGTCCAAAAGTAAACAGCAATGGAAAGAAGGAGAGATGGTGTCAGCAAAATGGTCTGATGGAACATACTACCCTGCTAAAATTGttaaagtcatttcaaaaGATTTTTATGAAGTTGAGTACGATGATGGATTTCAAAAAGCGATACATCAAAGTAAAATACGAGATCAAGATGCAACCAATAAGAAGCCAGCGTCAAAGTCCATGTATCAACCTCTACGTAAAGCTCAGCTGGCACATGACCGTGCATCCAGAGCGCGAAGAAGAAGTGGAAAAGATTCGTCAGTGCTGTCTCCAACGTCAAGTGAAACAGCTGAACAGACAGAAGgaatgaaagaagaagaagacgtTGATGAAGAGACAAAGGAACAGGAAAAGCAAGAAGAAGATGAGAGACCAAAAGCAGTGTCAGAGAGCAACACTCGGCCCTCACGTAAACGTAAACGAACAAAATGTCTTCTACAACATGAAGAAAGCTGTTCAGAAAAAGACAAAAGTATAATTGACGAAGATATAGGAAGCCAACACGATGTATCAAAATCTGGACATGAACCAGAAGAAGCAACTGAGCATGCTCAGAAATCTGCTGACGACGTCACAAAGACCAAAGCACAAACATCAGGAGGAAATTCCTTCAAAGCCAAAAGATTACGTCTAGATCAAATCACTGGCAAGCTTTCCATTCAACGGCAAACTCAAATCACAGCAAAGCGCGAAGTGATTAAACAAAAACTAGATAATCTTAAATCCGAAGAGATCACCAAAAGTACCCATGTGTCACCGCCAAGTTATCAACAAATATCCCCTAATCCCCCTCCATATCCCTGTGTATCCGCGCCTGCTCCTCGTATGACTCCGCAATATGTAGAACGTTATCCAGCTCCAACACTCCTTACCTATGGTGCACCTACTCAATGCACTGGTCCATGCTGTGCATACCCCCCTGGAAGTTCATATCCACCAGCCAGTTCCTGTGGATACTGTCTCAGCCCAGGGGGGGTGCCTCGTGAAACTTATGTGGTGTATGGTCCGAGAACGCAGACGTCATATCCCGTCATGGCCCCGACCATCACTCGGCCTTCTTCAGACGTTTTGTTTCGTCATGCAGGTGGCTGTTGTTCGTTGTATCCCACAGTTCTTCACGAGTCTGGTCATCAAAGTGCTTCCCCATTGGTTCGTCTGATGCAAGTTGAACAGCGTCCTCGTCCTGGCGTGTACAAACAAACTGCAGATCAGAAAGCTCTTTCCCCCAGGGGCATTTCTCCCAGGGGCATTTCCCCGAGAGGTATTTCCCCCGATGGTCGAAAGGTGAGTCGTACTCACAAGAAAGCTGAGCAGGAGTCTGGGGCCAAGCAAAGTTCTCGACAGGATAAATCTGAGGAGAAGAAACCGATGCACACAAGTATAGTGCCAAAGGACAAAACTCACTCCAAACCCGCCGACAAGTCTGACGAACGGACCGTCAAATACCACATTCCTAAGCTAAACACCCCACCTACTAAATCCAGTCATGGTGGACAGACCAAACTTCCCGGTGTCAATTTGACCACCCACCTATCTGCTCACCTCACCAAGAAAGACTCTGCCCCAACCAACACTCACCCGAAAACACCCACGCCCTCGCATCTTGTATTCGCTCCAAAAGAATTGCGTATTGAATTGGATCATAACAAGTTCAAATGCGAATATCCAGACTGTGATAAATCTTTCCGTAAGGCCTCCCTACTCGAATCTCATGTCAAGTATTATCACACTTCGCCGCTGGAGAATAaacgaaaaaggtcttcagTGGAACACGACCTTGATGACGAAGAAATGGATATTTCTGATCATAAGGAAGAAGATGTCGTAAGGTGTTTGTGTGGAGTTTATGAAGATTCAGGTTTAATGATACAGTGTGAGCAATGTTTCACTTGGCAACACAGTGATTGTGTTATTGTTGGTCAAGAACACGTCCCTTCCAAATATCTCTGTTATGTTTGCAAGAATCCCCCAGgACTACGAAAAAACGCAAGATACAAGAACAATTACGACTGGTTTAAAAGTGGCGTCCTGCCCTCCTTTGTGCCCCACGAAGAGAATGaagtgaaaattttccaagCACAAGCCACACATTGTCTGATATCGGACATGCATACACTCAACACAGAGCTCAAAGGAATGAAgcgaaaaatatatattctaaGAACTCCCAATCATGCAGATCTGAAAATGTGGGAACACAAGCAAGACATTTACGAAGACGACAGCTTGAGAAGTGAAAATAGCAAAGACGAATCAAACTTATCTGAGGTAAATGAACAGGAAAACACTTCGTGTGGACAAAGTGAGAGTGTCCCGCAAGACGTGAGCAACACGCGTGTAGCTGGCGAGGTGCGGGACACGAGCGATTCTAGGAATggagaaagtgaaagtgaaatgAAGAACGGTGAAGAAGTAGTGAAGAACAAGGACGTGAATAAACTTAGGGAAGAACAAACTGTCCAAGAATCCAAACGTCTGAACCCAGACACATCACACGATAAAACTGGAGAAGACGAGAAGCAAACAGCACAAGATTCAGAAGATTCGTTGCATTTGAACAACGATCAAGAACTCAATgagaaaaaaacagcaaatgaTATTTCTGTTGGCGATGGGAAAATATCAACACTTGAAGCAAAAGGTGGCGCTGAAAACACGGCAAGTAATGAAGGCGCGACAGAAAACAATAATGAGATCGTTAAAGGTGGAAATATGCCGACGAAAGGGAAGGATTCCGCGGTACAAGACGAGAAAAGGAAGTATAGTGGAGATGACTTGGCATTTATCAATCTTCTTGAAGAGGTTGAAGATGACCAAACGTTCTTTGATGAACAACTTGACAGAGTGGAAAAACAGGTTGAAAGTAAGTGTGACGTCTTGATTTACAAGTATTGGCGGGTTTGCCCCCTTGTTTCCAACCATCTACCTCGTTCCCAACCCCCACCTTTTTCCTACCACTCTGCCTCGTTCCCAACCCCCACCTCTTTCCTATCACTACTCTATGGCTCAGCCGTAAACTGGAGTAATGGTGGCTGA

Transcript

ENSAPQT00000010162

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V9H5	PHD finger protein 20-like protein 1 OS=Rattus norvegicus OX=10116 GN=Phf20l1 PE=1 SV=2
A8MW92	PHD finger protein 20-like protein 1 OS=Homo sapiens OX=9606 GN=PHF20L1 PE=1 SV=2
Q8CCJ9	PHD finger protein 20-like protein 1 OS=Mus musculus OX=10090 GN=Phf20l1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002607 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20826 all species →	PHD_5	PhD finger domain	Domain	Interproscan
PF18104 all species →	Tudor_2	Jumonji domain-containing protein 2A Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043449 all species →	Family	PHD finger protein 20-like	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR040477 all species →	Domain	Lysine-specific demethylase 4-like, Tudor domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15856 all species →	PHD FINGER PROTEIN 20-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0044545 all species →	Cellular Component	NSL complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000009048.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.