Gene detail

Detailed information of ENSAPQP00000009706.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3983844.1, U6 snRNA phosphodiesterase isoform X1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZYI9	U6 snRNA phosphodiesterase 1 OS=Xenopus laevis OX=8355 GN=usb1 PE=2 SV=1
Q6DEF6	U6 snRNA phosphodiesterase 1 OS=Danio rerio OX=7955 GN=usb1 PE=2 SV=1
Q5I0I5	U6 snRNA phosphodiesterase 1 OS=Rattus norvegicus OX=10116 GN=Usb1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003998 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09749 all species →	HVSL	Uncharacterised conserved protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027521 all species →	Family	U6 snRNA phosphodiesterase 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13522 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0034477 all species →	Biological Process	U6 snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23093	USB1; U6 snRNA phosphodiesterase	EC:3.1.4.-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.