Gene detail

Detailed information of ENSAPQP00000010015.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3980349.1, PHD finger 12 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000011220

ATGGACCAGTACGACGATCTTGATCCAGAAGGAAGCTGCTTTGCACAAATTCAAGCGTTAGTTCGGTCTGAGTTTGGCGAAGCAAGCCAAGCAGCGAAAACAGAGAAGGAAACTCGGAAGCCAGGACGGGCTGTGAATCACGATAGCTGTGACAGTTGTGGCGAGGGGGGCGATTTACTCTGCTGTGATCAATGCCCCTGTGCATTTCATCTCACCTGTTGtGACCCTCCTCTCGAAGAAGATGATATACCAACTGGTGAATGGCTTTGTAATGAATGCAAATCTCAGCCACTCGAGGTATTTATAATCACAGCCCTGTATTCTGTTTCCAACGAACATTCCAAAACAAAGAAAGATCAAAATGATAAGATCTCGTCTCCATTTCAGACTCTTGTTAAAATGAGTTCTGGAAAGAATCCATCAACTTTTACACTCCCCCCTGAACTCACATGTCATACATACTTCCCTGGTGACAGGAAAAGGAAGCATGAAACAGAGGAAAGGGTGTCAAATACGAAGAGTGACAAAAAACGTTTCGCCACAGTGTTTCCACAAcatcttgtttttttcagaACTGCCAGAAATTCACTTCATGGTGATCTCATTGAATGCGACTTTTGTCCACTTTCATTTCACACCAACTGTTTACAACCACCGTTGACAAACAAACCTTCAGGAATGTGGATGTGTCCCAACCACGCGGAACATGCCGAGCCTGGACTGAAAGATCCGCGCTTCAGTCGGCGTCTCAAAGCCTACGATGAGTTGCGtaacaatatttcgcaacatACAATCAAAATGGATTTTCTTAACCGCGTTCACAGACTACGCAGTCACCCTGATTTCAACAGAAAACAAGAGTCGTGGAAACGGAAGCGACTGTCACTGGTTCCCGAGTCAATTAAATGGCACTACAAGAATCCTCCTTTTCAACAACTTCCTGAACACGTTAAGGAGTCTGTGAAGCCACTGCCTCAGTATAGACTGCCCTGCACTCCACCCCAACCTTCAGAACAAGAAGagtGGCTGAAATCCATCGTATCCCTACAATGTGACATCGCAAAACACCTCGCATCGTTATCTGTACCCAAGCCTCAAGATGGAGTTAGAAAAACCGTTAAAGCCGTAATATCCGGGTCAACTAATCAcgtcatttcaaacaataaTATTAATACTTCGACAGTTAAAACGGTCACAACGGCAAAGCCGAATCCTGTGACGGCGAAATTAGTGTCCAGTTCTTCCACGAATTCGGCGCATACTTCAACAGTGACGTCATTTTCCCGCGTGGTTACCACGCATACGGTGACCTCTGGCGGGAAGACGCTGACCAAACCAATCACAATCCTGTACGCGTCGCCTTCGAAAAACCTGAGTCAGCAAAATGGAGTCAGCTCAAACGTGACGAAACATTTGAATAACTGTGTCAGTAAAATCTCATCAAACGATACGAAACCTTCAGCGAAGGTCGAAAGTCCTACAGTTCAAAAGGCAAATTTACCACAGACAGCAAGTTCCAAGACTCTTCAATCTTCCTCCGGTAATTCTGTGAAAACGACGGTGAAGGGAGATTTGAAAAGTTTATCAAACGGTCCAGTGGTAAAACCTCGGACAATAGGAGAGCCCACCAAAGCTGTGAGTGTCTCGCCACCCGGAACTAATACCCCTCGGAGTATGAGTGTGGTGGGAACTGTATCCACGGGGCTAAGTTCCGGTAGTGGAGCTACGAAGGTCATAGTGTTGACCAACACTGGTAATGGGAATATCATTAAGAGTATCGCGAATACGACCTCCGCGCAAAGGACTGTGGGAAGTTCTGTGACGACGACCACGGTTACAAGTCCAAGCGTGCAAAGGATTGTGGTCCAGTCCAGTCCTCAGAAAGGATTGGTTAACGGAACAGGGACCAGCAACGGGCCTTGTGTTACATCAACAACGCAAGCGGCGAGTCCTGTAAGCACCATCTGTGCTGTGTCGGGATTGGACACGATACAAGAGTCTGAATTAAGTAAACTTGATCCACGCCTTGTTCATGTTCTGGCTTATCAAAGATTGCAGCAACTGATAACTCAAACTACGGCGAATCCAACGAACTCCACTGTTGCAAGGAAGATTTCTTTCAGTAATAGCAAAGAAACTGTTGTCTTGCCGCAAAATGTTCCTCGAGGTAAAGCTATGGCAGTTCTTTGTCCCATGCATGGCGAGGGCTCCTCGTGCCCGATGATCTATAAAACACTGAACATTGGACAAGGTCCTGACATGGATGTATGTTTAAGAAACTATGGGTATTGTAATTTTTTATCAGACAAGCattgttcaatattttacGATGAGGCAACGAGGCAATACGAACTTTTGAACTATAGTGAGCATGGCACATACGTCGATAACGTTTTATATTCCTGTGATTTTTCCGACAAACCCCACCGGACATGTGTGACCTCCGGCCGGAGATTAGACCCCTCGAGGTTATCGAAGGAAAAACTCCTGGGGGATCGAAAAGCCGGTACCAAAGAATCGGCATCCCGGAGAACGGCGGGATTGGGCATCCAACTGGTTGCCAGGCCCTGCAACTGCTCGGCCAGTAGCTCGACCCTGATTGGCGGCAGCGGTGCAGGATGGGAAGGCACGGCCACGTTGCATCATGGGAGTTATATAAAAATGGGATGTTTGCAGTTCGTGTTCAGTATTGTGAACCAAGCGGGGAGGCTTGGTCTGCGTCGTTATTTATTTCGTGTagattttaaaaagtgtatAGAATGA

Transcript

ENSAPQT00000011220

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SPL2	PHD finger protein 12 OS=Mus musculus OX=10090 GN=Phf12 PE=1 SV=1
Q96QT6	PHD finger protein 12 OS=Homo sapiens OX=9606 GN=PHF12 PE=1 SV=2
Q04779	Transcriptional regulatory protein RCO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RCO1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005166 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF16737 all species →	PHF12_MRG_bd	PHD finger protein 12 MRG binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR031966 all species →	Domain	PHD finger protein 12, MRG binding domain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR038098 all species →	Homologous_superfamily	PHD finger protein 12, MRG binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46309 all species →	PHD FINGER PROTEIN 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0070822 all species →	Cellular Component	Sin3-type complex	Interproscan
GO:0140110 all species →	Molecular Function	transcription regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26244	PHF12, RCO1; transcriptional regulatory protein PHF12/RCO1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.