Gene detail

Detailed information of ENSAPQP00000010570.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4004377.1, LIM domain kinase 1 isoform X2 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000011801

ATGAGCGCCGTAGAAGCAAATTGCAGTGGATGCAAATTCCCGATCAAGAAAGATGTACACACGGCGCTGGGACTGAAATGGCATCGAAACTGCTTTAGATGCTCTGAATGTTTGAGTACCATTCCCTTGCATTATATGCCTCGAGATAATGTCTTGTACTGCAAGAAAGATTATATTCTGAAATTTGGTGAACATTGCCAAAGATGTACGAAGCAAATCACCGGACCTGTGATGGTTGCTGGTGAACAGAAGTATCACACTGAATGTTTCGTATGTACCAAGTGTCTGAAGTTTATTGGTTATGGAGACGAATACATGTTAGTTGAAAGACACAACCTGTACTGTAACGATTGTTATCGACATTCCATTCTGACGGCCATCAGCACTCCAGTGAGCAGACTGGGACGTTGTCACACAATTCAGCACATCAACCTGGCACCGACACCTGTGGGACGACGCAAATTCTCTGTCCTCATTGAGAAAGcgaacaacatcaacaaactgTTGCGCTCGGCGAATGCACGTTTCGCTCAAGATGGCGAGAGGAGGAGCTTCATCGCGATCGAAAATGTTGATGCTAGCAGTGAGTTGAAAGCCAGGGGAGTACAGAGCGGTGATAAGGTTCTTGAAGTTAACGACATCATGGTTACTGACGCCACCGTTGAGAAGCTCTCTCACATAATCTCGAACCCTCAGCGAGTGCAGACCATCACCATCGAGCGAAACACAGATAATCAACCTCCGCCACTGGAATTAAACCAACCAACAAAACCAGAAACCATAAAATCACCCATCCTGAGGTCACCTGTCGATAGACAAGCATCTCTGGATATTATTGGCAGTCCAAATTACGACCAAAAATTCAAGAGACCCAGCGTGCCTTGGGAAGAAGATAGCTTCGAAGATGATGGCggaaattcaaattcaacAGACAGAAAAACACGCAAGAAGCCAGAAAGAGCAAATTCTTTGCCTCGAAGTAATTCAATGGATAACAACAACGTGATGAAGTGCAATTCACCTCTCCATCGCTCACAGTCAATGAGGTCGGAATCTGGACAGGTGTTTCGTCCTTCAGACCTTATCGTTGGTGAGGTGATTGGTAAAGGTTTCTTTGGTCAAGTAAGCAAGGTGGTCCATCGTGGTACAGGGAAGATGATGGTTCTCAAGGAATTGATACGATGTGATGTCACTGCTCAGAAACAGTTCATTAAAGAGgTGACTTTACTTAAGACACTTGAACATCCTAACGTTTTGAAGTTTATTGGTATTTTATACAAGAACAAAGTATTAAGTTTTATCGCAGAATATATCCCTGGCGGAACTCTGAGAGGAATACTGAAAGACAAATCACGGGATTTATCCTGGTCCCAGAGAGTGAAATTTGCCAAAGATATCGCTCTGGGAATGGATTACCTTCACAAAATGAACGTGATCCATAGAGACCTCAAATCAAAGAATTGTCTTGTCAGGAAAGACGAGGGGATGACAATCGTCGTAGCAGATTTTGGTCTGGCGGGAATCATGAGCATCAACGAGGAACAGTCAAATGGCCAAGATCAAAACAACAATAGAAATGGAAGTTCACATTCCAACCTTTTATCAGCACGACCTCCCCCACCTAAAAAACGGACGACTGTCGTTGGCTCGCCTTATTGGATGGCTCCTGAAATGTTAAACGgAAATGCTTATGACGAACGCGTGGATATTTTTTCGTTTGGAATCATTGTGTGCGAGattATCAGCAGAGTGAAAGCCAGCCCGGATTTTATTCCTCGAACAAAAAAATTTGGTCTGGACGAGCCGTCGTTCGAGGAGAAGTTTTGTGAGACTTGCCCCAAAGCGTTCTTTCAAATTTCCTGTTTGTGTTGTGACCTGGATCCCAGCGCCCGGCCGACATTTTCCTCGCTCAGTCATTGGCTGGAGTCTCTGTTAGTCCATCTGGAAGTCGGTATGCCGCTGCCCAGTGACGTTGCTTACTCGCTTTTACCAAAATCCCTGAAAACATCAGCCGTTATAGACGCTAAAGAAACCCGAATTGTTCGCTGA

Transcript

ENSAPQT00000011801

ACTTTCAAAGTCCACGCTGAACCTGTCCAAAGTAAGATTGTATGCTAGGTTATAGCACAAATAAAAGCATGAGTTGAAATTCCGAGTAAAATAGACGAGTCTTGCGTGCAGCCAATATCAGTAAGTAATACTTTGCCTTTTTAAAATCCACCCTCACTGAAAGAGCCCGTCTATTTCCGGAGCTATGCCTCGTTGATTCTATTGAAATGATGGCGAAATTTGAAACCTCCTAGTGACTGGGTAAACATTAGTCACGAAGCGACGAGTACAGGATTTAAATTTATGTCCAAATCTACACTATGAGCGCCGTAGAAGCAAATTGCAGTGGATGCAAATTCCCGATCAAGAAAGATGTACACACGGCGCTGGGACTGAAATGGCATCGAAACTGCTTTAGATGCTCTGAATGTTTGAGTACCATTCCCTTGCATTATATGCCTCGAGATAATGTCTTGTACTGCAAGAAAGATTATATTCTGAAATTTGGTGAACATTGCCAAAGATGTACGAAGCAAATCACCGGACCTGTGATGGTTGCTGGTGAACAGAAGTATCACACTGAATGTTTCGTATGTACCAAGTGTCTGAAGTTTATTGGTTATGGAGACGAATACATGTTAGTTGAAAGACACAACCTGTACTGTAACGATTGTTATCGACATTCCATTCTGACGGCCATCAGCACTCCAGTGAGCAGACTGGGACGTTGTCACACAATTCAGCACATCAACCTGGCACCGACACCTGTGGGACGACGCAAATTCTCTGTCCTCATTGAGAAAGcgaacaacatcaacaaactgTTGCGCTCGGCGAATGCACGTTTCGCTCAAGATGGCGAGAGGAGGAGCTTCATCGCGATCGAAAATGTTGATGCTAGCAGTGAGTTGAAAGCCAGGGGAGTACAGAGCGGTGATAAGGTTCTTGAAGTTAACGACATCATGGTTACTGACGCCACCGTTGAGAAGCTCTCTCACATAATCTCGAACCCTCAGCGAGTGCAGACCATCACCATCGAGCGAAACACAGATAATCAACCTCCGCCACTGGAATTAAACCAACCAACAAAACCAGAAACCATAAAATCACCCATCCTGAGGTCACCTGTCGATAGACAAGCATCTCTGGATATTATTGGCAGTCCAAATTACGACCAAAAATTCAAGAGACCCAGCGTGCCTTGGGAAGAAGATAGCTTCGAAGATGATGGCggaaattcaaattcaacAGACAGAAAAACACGCAAGAAGCCAGAAAGAGCAAATTCTTTGCCTCGAAGTAATTCAATGGATAACAACAACGTGATGAAGTGCAATTCACCTCTCCATCGCTCACAGTCAATGAGGTCGGAATCTGGACAGGTGTTTCGTCCTTCAGACCTTATCGTTGGTGAGGTGATTGGTAAAGGTTTCTTTGGTCAAGTAAGCAAGGTGGTCCATCGTGGTACAGGGAAGATGATGGTTCTCAAGGAATTGATACGATGTGATGTCACTGCTCAGAAACAGTTCATTAAAGAGgTGACTTTACTTAAGACACTTGAACATCCTAACGTTTTGAAGTTTATTGGTATTTTATACAAGAACAAAGTATTAAGTTTTATCGCAGAATATATCCCTGGCGGAACTCTGAGAGGAATACTGAAAGACAAATCACGGGATTTATCCTGGTCCCAGAGAGTGAAATTTGCCAAAGATATCGCTCTGGGAATGGATTACCTTCACAAAATGAACGTGATCCATAGAGACCTCAAATCAAAGAATTGTCTTGTCAGGAAAGACGAGGGGATGACAATCGTCGTAGCAGATTTTGGTCTGGCGGGAATCATGAGCATCAACGAGGAACAGTCAAATGGCCAAGATCAAAACAACAATAGAAATGGAAGTTCACATTCCAACCTTTTATCAGCACGACCTCCCCCACCTAAAAAACGGACGACTGTCGTTGGCTCGCCTTATTGGATGGCTCCTGAAATGTTAAACGgAAATGCTTATGACGAACGCGTGGATATTTTTTCGTTTGGAATCATTGTGTGCGAGattATCAGCAGAGTGAAAGCCAGCCCGGATTTTATTCCTCGAACAAAAAAATTTGGTCTGGACGAGCCGTCGTTCGAGGAGAAGTTTTGTGAGACTTGCCCCAAAGCGTTCTTTCAAATTTCCTGTTTGTGTTGTGACCTGGATCCCAGCGCCCGGCCGACATTTTCCTCGCTCAGTCATTGGCTGGAGTCTCTGTTAGTCCATCTGGAAGTCGGTATGCCGCTGCCCAGTGACGTTGCTTACTCGCTTTTACCAAAATCCCTGAAAACATCAGCCGTTATAGACGCTAAAGAAACCCGAATTGTTCGCTGAAATATCCTCAGGTTTCAGTAAGCGAGACGGCACAGCAAATGGCGGTCAACTCGCGGTACTTTACAACTGTTTTACAATTACGCATTCTTgtgtgaaaatgaaattattttctctGCAAGTTGACCACCATTCGCTGCTTGCTAGTGCTTAGTCAAACTAAGAAATGGTTAAAGTATTcagtttaaaaattgtttaaatggTTAACATGCTTTGGAATCAATCTGAATTCCGGCTATTTCGGTGAAACGCAAAACGACCAAACGTCTTCAACTAATTTAAAATGTATAGaactatatgtatatgtatgaGAATGGGAATTCAATTGGCTCACACCAAGAAAATATGCTAAGATAGAAGTTTCGTATATATTTAATACAGAATCTAAATTAATGTAGTATAAAGTAGGAGAAATTGTTTAACgatgaataaaatgaaatgcTTTGGTTAGGGAAAACGTAGAAGGAATATCGAGAAGGGAAGACAAGTTCAAGACGATGCATTATCAAATTGCTTTGTAAGCACATTCTTCCATAATGAGGACAGGAAGAAAAAAAGATTTCCTGGCATGATATTTGAAGGTAAGCCAAGTTTAGAAACGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8QFP8	LIM domain kinase 1 OS=Gallus gallus OX=9031 GN=LIMK1 PE=1 SV=1
P53667	LIM domain kinase 1 OS=Homo sapiens OX=9606 GN=LIMK1 PE=1 SV=3
O42565	LIM domain kinase 1 OS=Xenopus laevis OX=8355 GN=limk1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001855 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412 all species →	LIM	LIM domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR050940 all species →	Family	Actin-regulating Serine/Threonine Kinase	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46485 all species →	LIM DOMAIN KINASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000010570.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.