Gene detail

Detailed information of ENSAPQP00000011280.1 in Leptogorgia sarmentosa

Genomic Location: :...
NR annotation: CAB3995616.1, myelin expression factor 2 isoform X1, partial [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSAPQT00000012585

CAAAACCCCTTCGATCTACTGTATAACTCTATGTACCCTCGGGAAACCCATTTTATCCATTGTACAACCCTGTTTAACCCTTTCAATCACTCTATCATCTTATTTAACCCTTTCAATCACGCTATAATCTTATTTATCCCTAAAAATCCATTGCAATCCCTCACGTAACTCTATGTGACCATCGTTAACCCAGTCAATCCACGGTATATCCCCAATTACCCCTTTGAAACGCCTTGAATCCTTCACTtcgccattttgtttcttcaaaGCGCTCGACGAAAAACAGTTGAAGAAGATTGATGTCTTATCGTTCAGAAAAAGACAACATGATGTCTGAAAGCGTTGAGCAATTTAAGGAACTAGCCAGGCAGATAGAAAGCGAGGAACATGGTCGCGGAGATGAACGAGAAACCGACAGCGAACGCGAATATCGTCGTAGTAATTTTGAACGCGAACGAAAGCTTGATTCGTCTCATTCTAGTCGCTATCAGCCCTACAGCACTTCTAGACCAGATCGTGAATCTAGATCAAGCAGAAAGGAAAATCGAGTTTATGTATATAACCTACCCTTCTCTCTGAAGTGGCAAGATCTTAAAGACCACATGAAAAAAGCCGGTGATGTGGTTTTTGCTGAAATTATGGAGGACTCGTCAGGGAAGTCAAAGGTTAGTTGGGTTGTAGAGTTTGTGTCATCGGAAGATGCGCAGCGAGCTATCAGAGAACTGAACGACAGTAACCTGGGTGGACGactgatgaaaatacgagagGATCACCAAGATCGTGATGATCGTCCACGAAGATCTCGTGATCGAAGCAGTCGAGATAGAGATGGTGGGAGTGGAGGAAATCTGGGTAGTGTCGCAGGCTTAAGCATGCTGGGTCTGGGACAGATTGGTCTACTGCAGCAGATGAGTTCAAAATCAGACACTGCTTCCTGTTCTGTATTTGTCAGCAATcttGATTACAGAGTCAATTGGGCCAAGCTTAAAGACACATTCAAGGCAGCAGGAAGAGTTGTGCGTGCTGATGTAGCAGAAGATCACGAGAAAAAGTCCAAAGGTCATGGAACAGTGCAGTTTGAAACACCACTGGAAGCAATTAATGCTGTCTTTACCATGAATGGAAAATCACTTTATGACAGATCAATGAATGTTAGATTGGATCGTGAGTCACCATACTTCAGCATGTttggtggtaatgatggtggaAGAACTGGCTCATCCCTGACTGCCGCAGCAGGTCTGCAGGGCGTGCCTAACCTCAACAGTCTTACAGGTTTAGCAGGTTTGACTGGAATGGGAGGTTTGGGCGGAGGTGTGAGTCCGCTCGCTCTGCTGCAACTGCAGAACCTTCAGAGTCAGATGGCAAGTTTGGGTAACATGGCGAACCTGGGTAACATGGCCGGGTTGAGTGGGTTGGGTAACATGGCGGGGCTTGGTACGGCCGGAATGAATCTTGGGACTGGTTCTACTGCCAATACTATGCAAAGTTCGCAGGGTGTTAGTTCCGGGGATACGTCATCGTTAGGTGTGGGTTCTTTCTCAAACCCTGGTGCGATGAACAGTGCCAACGGTGGTGCTATGGCTGGTGCTATGGCTGGTGCAAGTGCGTTGTCGAATCCTTATGCTCTGTGGATGCAACAGCTGTATGGGATGCAGGGTTTTGGCGGGACACAGCCTTCTTATTCAAGCACAAGTGAGACACAACCACTGGTGAAAGGTGACCCAGCAAAGCAGGTGTTCGTACGTAATCTTCCTTGGAAAGTGACCTGGCAGGACTTAAAAGACAAATTCAGAGAAGCTGGGCGTGTTGTGCGAGCTGATGTGCTGATGGACGAGAGCAAGAGGTCCAAAGGTTGTGGAACTGTTTTATTTGAAAGTGCTGAAGAAGCCGCCCGTGCAGTCTCGTCGCTTAATGGTACCATGTTTGACGGCCGTGAGATTGAGGTGAGAATGGATCGTGGGTGAGAATTgtacaaaaattgtttatgaaaatattctaCTGCAGTTTACGCCTTAAATCCAAGGCCTTACCACTCACTGCTGAACTCGATTGAAAGATAAGTTTTTTAACTTTAaagaaacattttgtgaaaaagCATAAAATTATTCTCATAGTTTTTATCGTTTATTGTTGATGTGAAAGTGACTTTGTATTAAACTTTGTCGATGTATAATGCTTGTTCTACACTTCTTTTATAGCTGACGACAGCGTTTTCAC

Protein

Uniprot

Uniprot term	Description
Q9P2K5	Myelin expression factor 2 OS=Homo sapiens OX=9606 GN=MYEF2 PE=1 SV=3
Q8C854	Myelin expression factor 2 OS=Mus musculus OX=10090 GN=Myef2 PE=1 SV=1
Q62826	Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus OX=10116 GN=Hnrnpm PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050374	Family	RRT5/SRSF/Splicing Factor SR	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24992	MYEF2; myelin expression factor 2	-	Transcription factors	ko03000	deepkoala