Gene detail

Detailed information of ENSAPQP00000011353.1 in Leptogorgia sarmentosa

Genomic Location: chr14:6421825...6426007
NR annotation: CAB3987278.1, Adenylyl cyclase-associated 1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSAPQT00000012666

AATCAAAAACACTTGGCAATGCCTTCGTTCATTTGAACGCAATTTGGGACGCTATGGTCATTGACCAAGCTGTTTTTCTTTCGATTTCGAAACAACCAAATAAGGCATCACTGTATTTTCCTGTAAAATATTAACGTTGCAAAACTGTGTGATTGCATCCTTGACTATATTTGCATAATACACGGCGAATATGGCAGGCTTAGAAGACTTAGTATTGCGCTTAGAAGCAGTTACAAACAAGCTAGAAGGTTTAGTTAAAAACGCAGACATCTGCGAAACAGAGAAGCAACAAACAGTCCAAGAGATAACGGAaaatttggatgaaaattCTAAGAATTCAGAGGAGAATGTTAGCAAACATTTGGACGCAGGTGCTTCTGTGACAGCTTTTGACGAGATCTACAATGACAAAGTGGCCGCATTCTTGGAGCTTTCGGCTAAAATCGGAGGCGACGTGAACACACAGGCCGATCTTGTGAAGAAAGCTTTTGCAGCCCTGAGACAGCTGTTGTGTACAGCAGAAAGCAGCGCAAAACCATCAGATgctAACCTGCCGGCTGTATTAAAGCCTTTAGCAGATTGCATTGGAGAAATTTCAAATTTCCGTGATCAGAATAGAAAGAGCCCACTGTTTAATCATTTATCAACAGTGAGCGAAGCAATTGGAGCGTTAGGATGGGTTAGCGTTtcacCAACACCAGGTCCCTATGTCAAAGAGATGTCAGATGCTGGCCAATTTTATGGCAACCGAGTGCTAAAGGAATACAAAGAGAAAGATCAAGACCATGTGAACTGGGTGAAAAATTATTATGGCATTTGGACAGCAATGATTGCATACATTAAACAACACCATACCACTGGATTGACGTGGAATGCTAAAGGTGGTAGTGCACCTGCACCCCCACCACCAGGTGGTGCTCCTCCCCCACCTCCTCCAGTGCAAGCACCAGCCCCTGTTACCTCTGGTGGTGGCGGCGATGCAAGTGGTCGAGCTGCGTTGCTGGATGCATTAAGCAAAGGAGAAGGCGTCACTGCAGGTCTAAAGAAAGTCACCAATGACATGAAAACTCACAAAAATCCAGCCTTGCGTGGAAGTAGCAAGGTGCCAGCTACCATTGGCACAGCCAAGTCAGCAACATCTTCTGCGTATGCCCCAAAGCCGTTCCAAGCATCGCGCCCAGGTGCATCAGTCACACGACCTGTCAGCATAAAGAAGCCACCCAAGAAAGAACTACAGGGTGGAAAGAAATGGATTGTGgaaaactttgaaaatgaTCGAAACATAGTGATAGACCAAACAAGCATCAAACAAACCTTCTACATTTACAACTGTAAGGAGTGCACCGTAATCATCAAGGGGAAAGTCAACACTGTGACATTGGattCTTGCAAGAAAACCGCCGTGGTTGTGGACGACTTAATAGCTGGTTTAGAATTTGTTAATTGTCAAAGTGTTCAGTCACAGgTGAATGGTGAAATTCCCCTGGTATCTGTAGATAAAACAGATGGTATTCAAGTTTATCTTAGTGAGAAGTCTAGAGCAGCAGAAATTGTGACAGCCAAGTCTTCCGAAATGAACATCTTAGTTCCAGGAGCTGACGGAGATTTTgcTGAATTTGCCTTACCAGAGCAATACAAGTCAACCTGGAATGGCAAAGGATTCACAACCGTACCCACAGAATCAACTTAAAACGGACAATATCAacacaatttttcaaataggaataaaaaaattatgttgtgccttaatttttacaaaattcatCCTTTCAAATTGCACagtattttgtaaacaaatttGATAAGTACATTAGCCGAGAATAGGAACATATTCATGTTAGATTGCATTCCTCAAAGATGTTTAATAAATTATGCTATGTGCTATTCGCTTGCGTTGCTAAcaaattatatttaattttataatttcctACGACTGGGCGTTTTGCACCTGGGCTTTTAACCCTGGGCATTTTAACCCTGGGCGTTTTAACCCTGGGCATTTTAACCCTGGGCACTTTAACCCTGGGCATTTTAACCCTGGGCGTTTTGAACCTGGGCGTTTTAACCCTGGGCACTTtaaacctgggcgttttaaACCTGGGCGCTTTTTGGGCGCTTTAAACCTGGGCAATGAAACACGGTTAGTAATCGTAGAGGTTTATTAGTATTCTCCAAATATACAcacatttataattatacagttattttacaaaaatattttcatgttttatacattttaaaattaaatccaTGGCAGTCACGATGGCAGAATAGAGAGAACCATCTCCTTGCCAGCATGGAGAAGCAATGGTACAAAGACTTGCTTGTACGTCTCCTTCTTCAAAATCTCCATGAAGCTCAATGGAGCAGGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SYV4	Adenylyl cyclase-associated protein 1 OS=Bos taurus OX=9913 GN=CAP1 PE=2 SV=3
Q5R8B4	Adenylyl cyclase-associated protein 1 OS=Pongo abelii OX=9601 GN=CAP1 PE=2 SV=3
Q01518	Adenylyl cyclase-associated protein 1 OS=Homo sapiens OX=9606 GN=CAP1 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002507 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08603 all species →	CAP_C	Adenylate cyclase associated (CAP) C terminal	Family	Interproscan
PF01213 all species →	CAP_N	Adenylate cyclase associated (CAP) N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001837 all species →	Family	Adenylate cyclase-associated CAP	Interproscan
IPR036222 all species →	Homologous_superfamily	Adenylate cyclase-associated CAP, N-terminal domain superfamily	Interproscan
IPR016098 all species →	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan
IPR017901 all species →	Domain	C-CAP/cofactor C-like domain	Interproscan
IPR028417 all species →	Conserved_site	CAP, conserved site, C-terminal	Interproscan
IPR006599 all species →	Domain	CARP motif	Interproscan
IPR013912 all species →	Domain	Adenylate cyclase-associated CAP, C-terminal	Interproscan
IPR013992 all species →	Domain	Adenylate cyclase-associated CAP, N-terminal	Interproscan
IPR036223 all species →	Homologous_superfamily	Adenylate cyclase-associated CAP, C-terminal superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10652 all species →	ADENYLYL CYCLASE-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0008179 all species →	Molecular Function	adenylate cyclase binding	Interproscan
GO:0019933 all species →	Biological Process	cAMP-mediated signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17261	CAP1_2, SRV2; adenylyl cyclase-associated protein	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Leptogorgia sarmentosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Leptogorgia sarmentosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →