Gene detail

Detailed information of ENSAPQP00000011373.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4034698.1, tRNA dimethylallyltransferase, mitochondrial-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000012688

CTCAAGGCGGGAATTTGGTTTGCCTTTATTCGAAGACCGGAACCACTTATTATCGTTATTCTCGGCTGCACGGGAACTGGTAAATCCAAGCTATCGCTTGAAATAGGTAAAAGGATTGGGGGAGAAATAATAAGTGCGGACTCGATGCAAGTCTACAAAGGCTTGGACATAATAACGAACAAAGTTACGGCCGAGGAGCGGGCGAGTGTTCCGCATCATTTGCTTGACTTTGTCGAAGCCAATCAAAAGTTTTCGGTGgttgaatttaaaactattGCGTTAGATGCGATTTCGGATATTCTCGCACGGCAAAAAGTGCCGATAATCGTCGGCGGGACGAATTATTATATCGAATCTTTGTTGTGGGAAAATTTGATCGATGAAAAAAAGGGCATTCGAGACGAAAGCGCGGAAAATCCATCGAAATTTCtgaaagttgaaagtgtggtGCGACGCGGAACCGTCCCTGCACGCGAGCCGAGCACGAATAACGCACGTATCGAGGAAGGCGATAACGCACGAGCACTCAAATCTGAGAACGAAAAGCGAAAAGAACGAGGCGACACGACTGCCATCGAAACTCAAAATTCATTCCATGAACAGCTTGCGAAAATTGATTCAACAATGGCACAGAAGCTTCACCCGAACGATACAAGAAAAATCAAGCGAAGTTTGCAAGTCTATGAGCAGTCTGGTGTCACTCACACTGAACATATAGCACAGCAACAGTCGCAGGAAGGCGCCAGCGAATACGGCGGACCAATGAGATTCAAGAACGTGTGTGTCCTGTGGATTCGCTGCGAGTTCGAAACCCTCGACAAGAGACTGGACGCTAGGGTCGACCAGATGCTCGAGCAGGGATTGGTCAACGAGCTCACAGAATTCCACAATTCTTGGAAACGTGAATCGAGCAattccaaaatcgagcaaaacaACGAGGGAATCTTTCAATCAATTGGATTCAAGGAATTCGGAGAATTTCTGAATCTTGGAAATACCAAAGTGGAAGAGAGTCCAgatttgtttcaaaagtgcGTGGAAGCCATGAAATGTGCGACTCGCCGCTATGCAAGGAAACAAGTTCGGTGGGTGAAAAACCGATTTTTGGGGCGGCCCTCCACCTCATCCCCCGATGTCTACAGCTTGGACGCGACAGACCTTGGGCGGTGGGGGCACAATGTCCTTGAAAAAGCATTAACCATTGTAGAGTCGTTTCGATCAGAACAAAAAGTCCCCCACGCCCCTCTAGAGCGTGTTTTAACCAGTGCTGGGGGCAAGCACTCCAATCACAAGTGCACTGTGTGCAACGGCAGGGTTATTATTGGAGATCAGAATTGGGAGGCCCACCTACGGTCACGGTCGCACAGAcactacaaaaaaaaacagcaaagaCTTCAGGAGGAAGAGAAGCAGGACAAATACGACGAATTGATATTAGCGCAGcaagaaaatatcaaaaagctcgaaaaagaaatatcaatgctgaaaaaaaatatcgaaaaGTATTCCGAGACTTTGAGCAAAAGCAAAAAACGCAACGACGAAGTGGGAAACAGCATTGAAAGAATATTCGAAGGAGAGGAGGGAAAATTCCGGGAAACGCTGGAAAAATTCTCAGAAATTCTATTCGACGTCGGCAAGTATAAAGAGAATCATGTTTGCATGATTTACGAGAAAGTCATTGGGGAATTGTCGCTGTCGCGTTGCCGATGCAAGCAAGCCACTTTTAATATCGACTTTGCGTTAAAGTCGCAGAAAGACGAACAGCGTAAAGAAAAACATCTGAAAAAGATTAAAGAGACGGAGCCTTTGGACAAGCAAAGGTTCTCGAAAGCACAGTCCGCGCTTCTCGCATCCGTCGTTGAAACGGAGAAGGCGTTTCACAGTCTGAAAGAGGAACTGGAGACGTTCGATAAACAACGTGTTGACGAATTGCGTGCTGTTTTGCTCGCGTTTACTGAAAGTGAGCTGAAGTACCATTCACACGCCCTGGAACTGTATTCCAGGGGTTTCAACATGCTGCGACAAAATGGTAGGTCAATTCGGACTTGA

Transcript

ENSAPQT00000012688

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80UN9	tRNA dimethylallyltransferase OS=Mus musculus OX=10090 GN=Trit1 PE=1 SV=2
Q9H3H1	tRNA dimethylallyltransferase OS=Homo sapiens OX=9606 GN=TRIT1 PE=1 SV=1
Q9UT75	tRNA dimethylallyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tit1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006450 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06730 all species →	FAM92	FAM92 protein	Family	Interproscan
PF01715 all species →	IPPT	IPP transferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039657 all species →	Family	Dimethylallyltransferase	Interproscan
IPR009602 all species →	Family	CBY1-interacting BAR domain-containing protein/FAM92	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR018022 all species →	Family	IPP transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11088 all species →	TRNA DIMETHYLALLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan
GO:0052381 all species →	Molecular Function	tRNA dimethylallyltransferase activity	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00791	miaA, TRIT1; tRNA dimethylallyltransferase	EC:2.5.1.75	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.