Gene detail

Detailed information of ENSAPQP00000011687.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3996891.1, double-strand-break repair rad21 homolog [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000013041

GAAATTGAGCAAAGCTCATGTGTTTGAAACAAATGTTGAGTCTTCAGTGGAAAGCATTATGTCGCCCAAAGTAAAGATGGCCTTACGAACTTCAGGTCATCTTCTCTTGGGTGTCGTTAGGATCTACTCAAggaaagcaaaatatttgcttGCTGATTGTACCGAGGCTTTTGTAAAAATCAAGATGGCCTTCAGGCCAGGTGTGGTAGATCTGCCAGAAGATGGCAGAGAAGCTTCAATGTCTGCCGTTACTTTACCAGAAGttttcaatgattttgatcTGCCTTTACCTGACTTGAATGATCTTGATATCCAAGTTCAGTTCAATTTGAACCAATGTCGTGCAGAGGAAATAACCATGAAGGAGGATTACATCATCATGCATACCTTTGAAGACGAGGGTTTTGGAGACACTCCCTTCGGAGCTACTGACGATAAAGAGATTCTTCGTGGAGGCTCTGCCAGTTTGGATGATTCATCATTCATGCGCTCAAAAGATCAGTCAAATATATTGTTGGACGAATCTAACGTAAAAGACGGCTCCACTATTACtgataaacaaaaaatagGCATACAACAAGATGATCCTCTGAACAATGATGTGTTTGGTGGTCTACTTGGTAATGATGGGTTTGGAGATGAGTTTGGTGAAGGTGTGCTACCTCCTTTAGAAGATCTTCCACCATTGGCTGCCTATGATGCCAGTCTTGATCCATTGAAGGAAGCTGAAGGCAGGGAGGGTGCTGTAGAGCTGATGGAGACTGATGAACTGAGAGAGCAAGAGGAGAAGACTGCAGAGGAAGAAGGAAGAACGGCAGGGGAAGAGAAAAAGGCCACAGAAGAAACTGAAGATTCTCATGAACTCACACTGAGAGAGGTTGGTATTGGCAACGAAACGACAATTGTTCAGAACGATGAAGAAGCTTTTGTTCTGGAGCCCATTGAAGTCGTAAGCAAAGAGAAACGGAGCAGACGAAAACGAAAGCTTATCGTTGATGATGAGAAGATTCTGTCGAGCAGAGCAATCAGTAGCCAGCTtgcaaacactgacgacattgTGCAGCCTGCTACTTTAGCACCGCCAACAAAATTAAGAATGAAACTCAAAGATTCCTGTACTGCAGATAAACTTTTCAACAATccagcaatagaaaatatcaCTTCTCATCTTCACAAAGTTATAGTGCAAAATTTGACGGCAAAGATTGTCGATGCCCCTGAGGTGGAAGAATTCGACGAGAAAATGGAATTGGAGGAGATTGAGAGCCCGAAAGacaatgaaaatgaagaagaaGTTATTGAGAAGATCCGAAGTCCGAGCTCTCCGCGGAAAAGAAGATCAAAACGGGCGTACGACAGCAGCGCTTCACCAGTCAAAGAAGCGCCGGAGGATCCTGCAGAAGTAACCAATGATGTCAACTTCGAGCAGTTTGGTCACATGGAGGATCCTTATATTCCCGAGGAAGAAAGTCGTGTTGACTTCGAAGAAAACACCGAAGAGATACCTGAATCACAATTGAACGATGAGCAAGCGAGCGGCGAGAAATATGAAGAATTCCAGGCACGACGATGGACGAAACGCACGCAGCAACTTATGCACACGTTACGACGAGAACTGAAGAGACGAGAAAGCATTGCCCTGGATGTCCTGAGCAAACAAGAGAGTCGTAAGCAGGTTGCTGTCAAATTCTACAGTTGCTTGTTGTTGAAGCGGGACAATGAAGTCGAACTACAGCAGAAGGATGCCTTTGGAAAAATCTACGTTTCAAAAGGGCCTTGTTTTGACTCGGTGTAAGAAGCAAGAGAATGAAGCAAGAAATAAAACTCCGATTCGTTCATGGTTTGTGCTCATACCTGCGCTATTTGCATTTAATCTATGCTTTTAGTCGAGAATTTTTTTCCCTTTAAATTTAATGTGAATGCTCATTTTATTGTACATTATCCCGACTAGTTTTGCGTTGTATAATACACCGTTTAATTATTATAGACCATTTGATTGGAAAAACGttaatttttggcaaaatagAAAACGTTCTTATCTGTAAATATTGGAATAAAATTCTTTTTTCTGAGATTTGTTTCCTAGAATTCTGGACTGGCAGTAAATTCCACTTTTCTAGAAAGTCGTTCTGGCAAAATGGATGAAATTTTTGAGCGAGGAtcaaagaccctgggtacgaggttagTTGTAAACAGGTATGTGACTATCCAGTGGTGATGTGCGGTTTATAGATCAGTGTGACAAAGCGCTTTACCCTCTCCCCCTCGGGGGATTTTGTAAGCGTCCCTTTAAACTTTAAAGTTAAAAAAGCAACCGTCGTTTTCTATGTCTTTgtaaacattctgaaatttctAATCTCTAGTTCGACGTTCAAGTGTTCAGATCTATCACTGTAAATAATAGAATTGTCAGAAGGATTATATCGAGCTGACCTCTTGTTAAGAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60216	Double-strand-break repair protein rad21 homolog OS=Homo sapiens OX=9606 GN=RAD21 PE=1 SV=2
Q3SWX9	Double-strand-break repair protein rad21 homolog OS=Bos taurus OX=9913 GN=RAD21 PE=2 SV=1
Q61550	Double-strand-break repair protein rad21 homolog OS=Mus musculus OX=10090 GN=Rad21 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006789 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04825 all species →	Rad21_Rec8_N	N terminus of Rad21 / Rec8 like protein	Family	Interproscan
PF04824 all species →	Rad21_Rec8	Conserved region of Rad21 / Rec8 like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049589 all species →	Domain	NXP-1, middle HEAT-repeat binding domain	Interproscan
IPR006910 all species →	Domain	Rad21/Rec8-like protein, N-terminal	Interproscan
IPR023093 all species →	Homologous_superfamily	ScpA-like, C-terminal	Interproscan
IPR039781 all species →	Family	Rad21/Rec8-like protein	Interproscan
IPR006909 all species →	Domain	Rad21/Rec8-like protein, C-terminal, eukaryotic	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12585 all species →	SCC1 / RAD21 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0007062 all species →	Biological Process	sister chromatid cohesion	Interproscan
GO:0008278 all species →	Cellular Component	cohesin complex	Interproscan
GO:1990414 all species →	Biological Process	replication-born double-strand break repair via sister chromatid exchange	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06670	SCC1, MCD1, RAD21; cohesin complex subunit SCC1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.