Gene detail

Detailed information of ENSAPQP00000011835.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028396669.1, uncharacterized protein LOC114520568 isoform X2 [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000013203

CGAGAATTGAAACATTACAATTTTCGTATCTGGGGGTACATCGGTGGATAAAAACGACGGTAGAAACATCAATCCGGTAAGTTTAGAGATCAGTTTCGGAGAGTTCCGTTGTCTGTCGGAACGTGCCGTGAAGTGGAAAATACGTGCCAGCCGCGACGCCAAGAAAATCGTTATTCCTCGTGGTTTGTCAGAGAAGGTCCAGATTTTACGAAAAAAAGTTATATTTCTACGGCTGAAAATGACAGATCAACAATATTCATACAGCGGCCCTCCTGGTGGTACTGGTGGCCAGCAAGGCTATGCAGCACAGGGGTATGGTGCCCCAACTCAACAGTCATATGGTGCTTACCAACAGCAAGGAACTGCTGGTAACACTGGTTATCAAGGAAGTGGGTATGGTGCTTCTACCACAACACAACCATCAAGTACTGGATATGGTCAAACTGGTACATACCAACAAAGTGGTTATACCCAAGCAGGGTATGGTCAATCAGCTAATGCACCACCAACTGATTCTGGACAATATGGTAGTGGTGGCCAGCAAACTGGTTACCAACAAAGTGGGTACCAGGGTTATGGTAACAGTAGCAACCCGCCACCAAGTACTACTGCGTCAAGTGGTTATGGTCAAAGCTATGGTGGTCAATCTGGTGGATATGGTCAATCAGGTGGTGGTTATAAGTCAAGTGGTGACCAGTATAGTGGTGGTAGATCTGACCAGCGAGATGGTAGTGGTTATGGTGGTGGAGACAGAGGAAGTTATGGTAGTAATGACCGTGGCAATAGTGGTGGTTACAATCGTGGTGGTGATGATCGCTATGGCAACAGTGGCAGTGGTGGAGGATATGGTGGTCGTGATCGTGGTTATGGAggGTGGAGGGCATTCAGACCAGGGATCAGGTGGTGCAGCTAAGGAATACCAAGACGACACAGTGTTTATCTCTGGTATCCCTGTTCATGTGACCGTGGAACAGATTGGAGATATGTTTGGCTCTATTGGGATCATCAAGATCGACAAGAAGACgcaaacaaagaaaatttggttgtaTCGTACGCCTTCAGGAGAGAGCAAGGGTGAGGCGACAGTTACGTACGATGATCCTCCGACAGCCAGTGCAGCCATTGAGTGGTTTAATGGCAAAGATTTCATGGGTGCCAACATTAAAGTTGAACTTGCAGAGAAATTTGTTCCAAAGAAGATGCGAGAGAGAGGAGGAGGTGGTGGAGGACGAGGTGGTGGTCGTGGTGGTGGACGTGGGGGAGGTTTTCGAGGAGGACGGGGTGGAGGCGGCGGGGGTGACCGTGGAGGAGGTGACTGGGATTGTCCAAGTTGTGGTAACATGAACTTTGCTCGAAGAACTTCGTGTAACAGATGTAACACTGCAAAACCTGATGATGGCAGTGGTGGAGGTGGAGGTGGAGgtTATGGTGGTGGGGGTTATGGTGGAGGTGGTGGTTACAGAGGTCGTGGGGGAGGACGAGGAGGACGAGGGGGTGGTAGTGGATATGGAGGAGGTCGAGATGGAACGCAAGACAGACGACGTGACAGAAGAGATGCACCCTACTAACTGTTCACAACAGATGCAATTTAACCAACTGAGGAAAACAGCTTCAGAAATCCTCTGCTACATTTATACAGTTGATGTGGCTGGTGTAAAATAGCTGAACCCTTTTTAAATGCTAGTGACTGGTTTTATTTAGTCAATGACTGCAGAAAGACATGCATTTAAGCAACAGTTTTGAATGTTCAATATTATGTACACGTAGTGATGTGAAtgtacatgttgttttatGCTTTGATGTAATgtacatgttttcattaaatttgtCCAATTTcttgttaaatttaattgaTTGGTAAGTATTTTACTAGGCCTTCTACTCCCTATTTATACCTTGGTGGATCGCAAGTAGCAAATTTAACCTGGGATGTTTGAAAATATGACCTATATGAGGGATGTGAAACCCAGCAGATCAGGAGTAAGATTGAAGAAGATTACAGTCATTGGGCAGGTTACTATTATTGGTTTATTGATGTGTCTTTGTACAATGAGTGGAATCAAGACTGCAGACAGACTACATTTCTGCCAAATTTTAAGCCAAATAATGGATGGACAAAGCTATGATGGTCACAGAGCTGGACGTGGTGGAGAGCAATGTTATGGTGATGGTAATTGTTATGGTGAAGGAGGTTGTAGTTCTGATGACTGTAGTTGAGGTCGAGGCTGGTCCCTTTGTGGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92804	TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 SV=1
Q9AST1	Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1
P56959	RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003922 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00641 all species →	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034870 all species →	Family	TAF15/EWS/TLS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23238 all species →	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000011835.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.