Gene detail

Detailed information of ENSAPQP00000011874.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3983959.1, Squamous cell carcinoma antigen recognized by T-cells 3, partial [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000013244

atggcggacgagAAAATGGATTTTTCCACAAGCGAACAAGAAAAAGAGTGTATTTCAGACACTAAAGAAGCCGAAAGCAATCGAGAAGGTGAAATCGAGGAAGATATAGATGATTCAGATGACTCAAGCGATAGCGATGAGTCTGAAAGTGGAGAAATAACAGCTCTGCGCCAGTTTTTAGAAAGCTCCCCGTTTCATTATGAAAGCCATCTTAAGTTGATCCGTGCCTTACGCGATATTGGTGACTTGGATAAGACAAGACAAGCAAGAGAGATGATGAGCAAGATGTTCCCTTTAACACCAGAACTTTGGTTGGAGTGGATTGGAGATGAGTTGCCATTGGCGTGCATACCGGAGCAAAAGGTTTACATTCGTGAACTATTTGAAAAAGCTGTTAAAGACTACCAGTCTGTCAAATTATGGACAGAATATTGTCAATATGTCCTGGACAATATGGAAGGAGAAGCTGGAATACAAGATGCAAGAGCTGTCTTTGAGAGGGCCATTACTTCTGTTGGTCTACACTTGACTGAGggtgtatcaattTGGGACGGCTATAGAGAATTTGAAATGGCATTATTTGATTCTTATAAGACAATGGCTGAAGGTTCAGATTCAACAAAAGCTCAGCAAAAAGTAGAGCAACAAAAGGAAAAAGTCAAAAGCCTTTTTAGAAGAGAAATATGTGTTCCACTGATTGGAATGCAGGCCGTATTTCGGGAGTATGAGGAGTGGCTTGGGGACGAAGAAATTCTTGAATATGTAGCAAGAGGGTTTAACAAAGCAGAAACGAAGCTTGAGGCATGCCTACCCTATGAAGAAGAACTGACCTCAGCAACAACACCTAAGCTTGACGAATATCGCTCCTACATTgcttttgaaatgaaagagaATGATTTGGCTCGTGTACAGTGTCTTTACGAGAGGGCAATGGTGGAGAACTGTCTTAATTCAGAGTTTTGGATAGAATATACTAATTATATGGATACAAAACTTAATATTGCTGACGTGATTTTACCTGTACACGAACGAGCTGTTCGAAATTGTCCTTGGGTCGTCGCATTGTGGTGCAATTACCTGAAAGCGATGGAACGTACGTTACGAAGTCATGAAAAAGTTCAAGAAATTTTCGAGCAAGGCCTCTCAGCAGTCCTTTCGAATTCTCAAGATTCTGTGTCACTCTGGTGCTGTTTCTTGGAATATCTAAGAAGGCGTGTAAAGGACTGGGAAGAAGAAAGTCCGGAGAGAGAGGAGTTGATGAAAGCCTTTGGTGATGCAATGGAGTATTTGGACAGAAATTACGGAAAAAATGCAGATACACAAGCTTTGGTGTTAAGATACAAAGCCCACTTAGTGgcaacaaaatttggcaaTGTTGATGAAGCAAAGAAAATCTGGGATTCCTTCATGCCCTCTCACAATCGTGATGCCGACTTTTGGCTGGAGTATATCCAACTGTTAAGGCAAACAAATGACAATGTTGGTTGCAGAAAAGTTTTTATTCGCGCGATTCAGACGTCTAATGATAAACCAGAGTTGTTGTGTGAGTTGTTCCAAAAGTTTGAGAGGGAGGAAGGTTCCCTGAGTGATCTAGACACTGCAATAACCAAATGTTCAGCCAGAATGAAACGAGCCAGGGAGCAAAAATCAAGGGAAAACGAGAAGATAGAGGCTGCTCGTGTTGCCGAAGAGGAAGCCAGCGCGAAAAAGGAGCAGGCAAAAGCTCAGAGGCGTGCTCAGAAGAAGACAGAAATAAAATCAAAAACGGAAAGAATTAAACGAAAACACGACAAAGACGACGAAGTGAACAGAGAGAGCGGTGAACCGGAGGCAAAACGACCTTTTGTTTCAAAAGAGGAACAGACGACAAAATCTAGAGATGTACAGGAGGCTGCGACGGAGAAAGTTCGCGACCGTTCTAAAGATCCTCAGACAGTGTTTGTGAGTAATTTACTTTTCACAGTTGACGAAGAGCAAATCAAAAGTACATTTTCACCCGTGAGTATTTCTTGTTTTTCTGTCGCCGCTGCCTTGGCCATTGACAGACAAGAGCTGCGTGGACGTCCAATGTTCGTCTCTCCTTGTGTCGATAAAACCCGCACTCCGACAACATTCAAGtttcCGACCACGCTTGACAAACACACGATCTTCGTGACCAACTTAGCTTTTGAGATGAAGAGCTCAGAGATTGAAGAAGTTTTTAAAGTGCATGGcaaaattaaagaggttcggtTGGTTACAAACCGTTCTGGCAAGTCGAAGGGTTTTGCTTATATTGAATATGAGGATGAGGTAATGTGA

Transcript

ENSAPQT00000013244

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JLI8	Spliceosome associated factor 3, U4/U6 recycling protein OS=Mus musculus OX=10090 GN=Sart3 PE=1 SV=1
Q15020	Spliceosome associated factor 3, U4/U6 recycling protein OS=Homo sapiens OX=9606 GN=SART3 PE=1 SV=1
Q5REG1	Spliceosome associated factor 3, U4/U6 recycling protein OS=Pongo abelii OX=9601 GN=SART3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003669 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05843 all species →	Suf	Suppressor of forked protein (Suf)	Repeat	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR008847 all species →	Domain	Suppressor of forked	Interproscan
IPR003107 all species →	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17204 all species →	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22611	SART3, TIP110; squamous cell carcinoma antigen recognized by T-cells 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.