Gene detail

Detailed information of ENSAPQP00000012219.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028395522.1, intraflagellar transport protein 56-like isoform X4 [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000013608

agCTGTAAACTCTAAAAATGCTGAAAAGTGGTAATTTTTGTtcagaaattttcaaatatgttGTCTGGCTGGCAATCAGCAAGAAGCACCAGTTACCTCGACTTCACCGCTGTCGATGATATAGAAATTATCACCTTCCTCGCCTGAAATCCAAAAATACTTCATGTGATCATTGAAGgctaatACGCCGATCTGTGTCATGGCGACCACTACAACAATGTTTTCAATGAAATTCTACAAGaattgaatgtaaaatttacaACGAAGACAAAGTTTTATAGAGAGTTTTTCTTGTTAAGATGATTCTTTCGCGAACGAAGCCCGCCATGGGCCCAGGATCCGCAGGGACAagtaaggaaaataaaaagaagaaaaaaatcccTAAAGTTGAggaatttttacaaaaccGAGACTTCACTGGCGCCAGAACTTTGCTTGAGTTCAATAAAAATTCTGGCAAAGGAGATGAGAAAAATGGCTTATGGGCCGCATACTGTGCATTCCATTTGGGTGATTATAAAGCAGCGTTACAGGAATATCAAGAGCTTGCAAAGACCAATGCTGCAACACCAGAAATTTGGATCAATCTTGCATGTTGTTATTTCTTTTTGGGAATGTACAAAGAAGCTGACGAGGCTGCCTTAAAAGGACCTGGTGGTCGTGGTCAAAATCGGCTTCTGTTTCACCTGTCGCACAAGtttAATGATGAAAAAAGGCTAATGAATTATCATCAACAGTTGCAAGACATCATTGAAGATCAGTTGAGTCTTGCCTCAATCCACTATCTTAGAAGTCATTATCAAGAAGCAATCGATATATACAAGAGAATTTTGCTTGACAACAGAGACTATCTGGCGCTGAATTGTTATGTGGCGTTGTGTTATTATAAGCTAGACTATTATGACGTATCTCAGGAGGTTTTGGCTGTTTACCTGCAACATTATCCCGACAGTGCCATTGCTGTCAATCTGAAGGCGTGTAATCACTTTCGTCTATATAATGGAAAAGCAGCAGAGGCTGAATTGAAAACTCTGCAAGAAATTGCATCGCCATCATTCGAATTTGCTAAAGACCTCATGAAACATAACTTGGTCGTATTCCGTGCTGGTGAAGGCGCTTTGCAAGTTCTGCCCCCTTTGGTTGATGTCATTCCCGAAGCAAGATTGAATTTGGTGATTTACTATCTAAAACAAGACGATGTGTTGGAAGCTTACAACCTGATTAAAGATTTAGAGCCAACAGTACCTCCAGAGtacattttgaaaggtgtggTTAATGCTGCTCTTGGCCAGGAACAAGGCTCGagaGAACACTTGAAGATTGCGCAACAATATTTTCAGTTGGTTGGTGGATCGGCGAGCGAATGTGATACTATTCCTGGGCGACAATGTATGGCCTCTTGTTTCTTCTTGTTGAAGCAGTTTGAAGACGTCATGATCTATCTCAATTCTGTCAAGAGTTACTTCTACAACGATGATGCGTTCAACTTCAACTACGCTCAAGCCAAAGCGTCGTCAGGAAATTACAAGGAAGCCGAAGAACTTTTTCTCCTCATTCAATCTGAAAAACTCAAGAATGATTACACATACTTGAGTTGGTTGGCCAGATGTTATATCATGAACAGAAAAGCTAGGCTGGCTTGGGAGCTGTATCTAAAAATGGAGACATCGGCGGAGTCGTTCAGTTTGCTTCAACTGATCGCCAACGATTGTTACAAGATGGGTCATTTTTATTACGCCGCGAAGGCGTTCGATGTTTTGGAAAGACTCGATCCAAACCCCGAATATTGGGAAGGCAAGCGTGGAGCTTGTGTAGGAATATTCCAACAGATCATTGCTGGGCATGAACCAAGGGAGACGTTACGTGACGTGCTTCAGTTGTTGCGTAACACAGGCAATCCCCAAGTGGAGTACATCATCCGCACAATGAAGAAATGGGCAAAGGAAAACCGAGTACCTGTCTCATAATCGCAGATAAGATGTTTAaaactaatttattatttatatcttgtatatatattatgggGGGAGTCAAGTCCGGCCTATAGATACCCAAGATTTTCACTGTGAAAAGCGTTGTAAATAACAAATGCTTTATGTCTACTATGTTTTTTTCCCGATGTTTAATCGTGCAGAATGAAGACATTCGAGCGACTCCAAGCGATTTTTTCCTGGACAAATTTTTCGACGGGTTTATTTTCTCGTGTCGACGACagtttttttgtcaatttttctCATTGAACTCCCATTTAACGTGAGGGAGACTGATTTCGGCGAAAacgtgacatttattctataacaatccttaaaaacaggaattctgcaccgtttcggtttttgccaatataaaaactattgccagacttcgcctactttgggaaaaattaaggaatttgaaaattcctacgaaggatttttcgcaccaccgccgccatcttggatttattctataacaatccttaaaaacaggaattctgcatcgtttcggtttttgccaatataaaaactattgtcagacttcacctactttggggaaaattaaggaattttataattcttacgaaggatttttgaAGGATTTTTTACTTGATGTCTAAGGCCATATGAGCCTACATTTATCTGGAGCCTGGTAGTACTTCATGTATGTCTATACATTCTTTACATATTGAAGGCAAAAAATAGCAAGACTTGCAATTGTATTTCCTTTTAATGTCGTTTCCAGTAGGACACACTGTTAGTATTAATTTATACAAAAGATCAACTCGAAAAATATTACATACATGAGAAAAGCAATAGCATTGATATGGAATTACATAGCTAATATTAACCAATTATTTCCTATAGTCATTAGTAGTATTCACCAGAAATTAAGCAGCAATTGATTACATCCAGTCCTTTTTAATATCAAACGACCATTCCCATTCAAGGTAGACTATTTTATCATCATCCAAAAACTTGCTTTTTACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U2N8	Intraflagellar transport protein 56 OS=Rattus norvegicus OX=10116 GN=Ift56 PE=2 SV=1
Q8BS45	Intraflagellar transport protein 56 OS=Mus musculus OX=10090 GN=Ift56 PE=1 SV=1
Q4R7Z9	Intraflagellar transport protein 56 OS=Macaca fascicularis OX=9541 GN=IFT56 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006480 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12895 all species →	ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR030511 all species →	Family	Tetratricopeptide repeat protein 26	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14781 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0035720 all species →	Biological Process	intraciliary anterograde transport	Interproscan
GO:0035735 all species →	Biological Process	intraciliary transport involved in cilium assembly	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0097546 all species →	Cellular Component	ciliary base	Interproscan
GO:0120170 all species →	Molecular Function	intraciliary transport particle B binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19685	TTC26, IFT56, DYF13; intraflagellar transport protein 56	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.