Gene detail

Detailed information of ENSAPQP00000012244.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028411757.1, LOW QUALITY PROTEIN: activating signal cointegrator 1-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000013633

CGGGAATCTGAAAGTCGCGCGTGGGTTTCCACGCAAACTCGCAGAACAAAATGGTGGACAAATTCAAGTTGTGGTGCCGAAATGAGATATCGAAATTGCTTGGTGCTGATGTAGGACAAGAATTTTCGGACTATTTGCTCACAATTGAAAGTGTGGCAGATGTGAAGGAATACTTGTTCCAGTTACTTGATCCAGATGACAAGAATGTACAACAGCTTGTACAACAAATTTGTCTCAATTGGCCAAATGCCAAAAGCTCAAAATTCCCAAAGAATGATGAAAGAAATGAGAGGCCAAAAATTGTCCCTCAAAAATCGACATCAAACAACGAAATAAAGAAGCAGACAGTGAATGTGAAAGGGGAACAATCTCCTGTAAAGAAAAAGTCGTCACATTTTGTCTCGCTGTACAGTGACGAAGGACAAGCAAGAACCAGTGTACGTCTGCCTGGGCGACATCCTTGTGAATGCTTGGGACAGAAACACAAACTggtcaacaattgtctacaaTGTGGGAGGATTGTCTGTGAACAGGAAGGCTCTGGACCATGTTATTTCTGTGGTGAAATAGTTTGTACAGCTGAGGAACGAGAATTGCTTGAGAAGAACTCAAAACGAGGccaaaaattgaaagaaaaattgttgGATAGCTGGAAAACAAAGGAAAATGACAATGATGAATTGAAAAGTCGCAAGGCAACTGAGTTGAAGGACAGATTACTGGAGTATGATAGAACAAGTGTTCGCCGTACAAAAGTGATAGACGATGAATCTGATTATTTTGCAACCGATTCAAAGTGGCTGAGCAAAAAAGAACGTAAGGTTTTGAAAGATAAAGAGGACAGACTACAGAAACTAAAACATGCTTCCAGACGAGATAAGAAAATTACATTGGACTTTGCGGGAAGGAAAGTGATTGACGAGCAACCGACAGAGGAAATAAATGAAATTTACAAATCTGCTGAGGAATTCCTTGAATCAACATTGGGAAACAACAATGGATTCAGCCATCCTGGATATGTTGCAGAAGCCCCTGTGTATGTTGAAGATGATCCATCATCATCTGGGAGAAAAGAAAAGTCAAGAAAAGTGAAAGCCAAGGAATCTTCTCACAATAATACACTCCGTATTCAGGATAAGGAGCTATTGGAAATGACAGATGAAGGGAAATGTTTAAGTATGCATCAACCTTGGGCATCATTGTTAGTCTGTGGGATTAAAAAGGCTGAAGGTCGCAGTTGGTATACAACTCATCGTGGTCGTCTGTGGATCGCAGCCACTGCAAAACAACCTGACAAAGAACACATTGACCAAATGGAAGCATTTTACCGTGCTTTGGGAGAAAAGTCACGTTTTcctcaacattatccatcagGATGTCTGCTGGGCTGTGTTGATATTGTGGACTGTTTATCACAAGAGGAATATAGTGAACAGTTCTCTGGTGGTGAGGAATCGTCATCTGCATTTGTGTTCATTCCTGAAAACCCTCGGGAACTCGTTGTGAAATTCCCTGTCAAGGGGCAGCATAAAATATGGAAATTGGACAAGCACATTCATCAGGCTGCTAGGAAAGGGATCACATGACGAGCATGCGTGGAAAACGAACTCAGAAAAGATTGGTAAACCAGTGAGATAAGTACATTGAATTTGGGTGTTTAAATTGAAGATGGTGTGATTGCTGGATGGTGTAATATGGAAACAAGCAGTACAGAGGCAGGTTGGTACTGGAATCATAAAGCAGTTTTTCTGTTATATGATTCTAATGCTGACTTGTCTCTGTTGCtgacttttcaaaatatacaccAATGCTGACTGCGAATGTGAATTCAGTACTATGATAGGTGACCCTAAAATCTGGGTTGTTTCATTGAATACTTCAATTTTATGGAAGTATCTTGCTTTTATGGCTTGTAGTGGTGATATGCTTTGAGATTTCTCCCTCCCACAACATTGCTGCTCCTATATATTCACAAATATTCCTATATACTCCTACATATTCCTTATATTCACAAATATTCCTATATGCTCCTAAATATTCCTTATATTCACAAATATTCCTATTCATTCCTAAATATTCCTATATATTTCTTATATTCACAAATATTCCTAAATATCCCtatatatttcgaaattttcgtatATATTCCTAAATATCCCTATATATTCCTAAGTATCCCTATATACTCCTGAATATCCCTATATATTCCTAAATATCCCTATATCTCTctatatattcaaaaatttCCCTTTATATTCCCAAATATTCCTATATATTCGCGAGAGCTGCGGTGTCGCGCGAGGGAGAAATCTCGAAGCATATCACCAGCTATAGAAGAAAGACATTTCCATAAAATTAAAGTATGCAAGAAGAACGTCGGATTTTTGGGCCACCTGTTATAacctttcataaaatattCTAAGCGTTCAAAATTGGACCAACGCTGCCTGACCACGTGTACCATAGAAAAAACTTTCTAAACTCTCTATGCTCACTGTAAACAACTTTCACGTGAACGGCACGCGCGcgccagcct

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15650	Activating signal cointegrator 1 OS=Homo sapiens OX=9606 GN=TRIP4 PE=1 SV=4
Q9QXN3	Activating signal cointegrator 1 OS=Mus musculus OX=10090 GN=Trip4 PE=1 SV=2
O13855	RQC trigger complex subunit RQT4 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC1A6.01c PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007434 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06221 all species →	zf-C2HC5	Putative zinc finger motif, C2HC5-type	Domain	Interproscan
PF04266 all species →	ASCH	ASCH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007374 all species →	Domain	ASCH domain	Interproscan
IPR039128 all species →	Family	Activating signal cointegrator 1-like	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR009349 all species →	Domain	TRIP4/RQT4, C2HC5-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12963 all species →	THYROID RECEPTOR INTERACTING PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0072344 all species →	Biological Process	rescue of stalled ribosome	Interproscan
GO:0180022 all species →	Cellular Component	RQC-trigger complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23398	TRIP4; activating signal cointegrator 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.