Gene detail

Detailed information of ENSAPQP00000012394.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4028582.1, trinucleotide repeat-containing gene 6A -like, partial [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000013793

GTCACAAAGTGTAGAGACAATCTTGTAAGACAGAGGGAGGAAGCAAAGAAAGATCCTAAAAAGCTATTTCCACAATATTTTCAGCCAAAACCGAAGAGCAAGAAACAGCTTCTTGCAGAGCAGAGGCGCagagaaaaagaaatggaGAAAATTGCGGTGGAACttgagaaaaagaagaaagaagaTGAGGAGAAAGAGAAGATCAGAAAACAGATGGAGGCTGAAAAACAGAAACGTTTAGAGGAGGAGAGAAAGAAAACAGAAGCTGAAGCAAGACGGCAAAGAGAAAGGGAACAAAAAGAACGTGAACGATTGCAAAAGTTGGAACAAGAACGAGAAAGGAAACAAAAAGAAGAAGAGGAACGAaggaaaaaagaagaaatgaaaagaaagaaagctGAACAAGAAAGAATTGAGAAAGACAAAGCCGAGAAAGCTGCCAAGATCAAGTACCATTTCTCAATTGATATGTTGTCATTTTTCCAGAATCTGAAGCGTAATACACCTCAACGTAATGATCAGACATATCCTCGAGAAATTCCTCCAAGATTTCAACGAAGAATGAAACAgcaacaacagcagcagcagcaacaacaaactGTATTTCCACAACAGCTACCGAGCACTTCCATTTCTCAAATAACACCCGTACAGCCACAAGCTATTGGCAAGAAAAAGGACCCGCAGCGCTGGACAAAGGGTGAGTATACAGGGATAATTGAGGACGTTCAGGATGATTCAGGTTGGTCAAAAGCACCACCTGCAAAGACTTCGGAAAACTGGGAGGAGACAACGGACGATTGGGGTGGTGAGGGGTCATCATGGGATGAAAAACCTATTGGTGATGAACGAGTAATTGTGGATAAAACTGATCAGGACTCTTGGCCCACCGTTGGCGTGAAGGCAAATAGCAGAGAGGAAATTTCTGGAAATATTGACACAGTTTCTGAGAAAGAAAGTATGAGTACATTCGGAGATTCTTTAGACGCTGTGATTGATGGAATGGAAGCGGCCGAAGAGGCTGCTGGTAAAGACAGTGGGATTGGGAGTTCTAGTAATTCGTCACAAGATTTTGATAAAGGCCAAACATGGTCAAAAACTCCTGGAAAAGATCTCAAGTCAAAAGGAAATACAGAGAATAGTTCTGAGAGTTTGTCAAATTCTTGGGAGGAATCTGCTTCCGGTTGGAATGAAGCTTCTTCCGGGTCGAAACAAACCGCTTCCGTTTTAAAACAGAACACTTCCGGTTGGCAAGAacaaccggaagtaagtgacaAATGGAAAGCTGTTGGAAATCCCGGAAGTAGAACTGAATCTGCTCCAAACGATGAAACGGGCTGGGGCGAAAGTTCTGCTAACAAACAGAATAGCGGTAGTAATTGGGGGGCCGCATGGTCCGCGCAGGGGCTAAGCTTGACTGGAACCGAGATTTGGGATCAAAGTAGCGCTGATGGGACTGGGGACAAAGGTAGTGATTGGACATCAGAGGATTCGAAAGGTAATACAGAGACAGGATGGGATTCAGTAGGACAATCGGGTGATGATAATGGTAATGAGTGGAACAGTTGGTCTACGGCAGGGTCGAAACGAAACAAGGCTCCCAAACCTAATCCAGGAAATGACGAGAATGCGTGGCTGAGACGTTCACTTAAGCAGCTTGTCGATATGGGTTTTAAGGAAGTTGACGGAGAAAAGGCACTAAAATCAAACAACATGAGTCTGGAAGCAGCCATAAGTCAACTGCTTGGCAGCCAAGGCACTCCACCCACAAACCAATCTTCCATGGGAACTACGCTACCAGCTGAACTTCTCTCAGAGGCCACTGGCTCTACACAAACAGAGGAACCAGATATCTCAAAATTGAACAGAAAACAACGACGAAGACTAATGCAACAGAATTCCGGACCTGATTTACAAGCGACAAATTCCGAACCTCTTGCGGAAACCTCCGAAGGGACTGGAGTAAATGTAAACATGCCAGTGAGTTCGGCGGCAGTTTCCGAAGTAAGTCGGATGCCGATCTCTTCCGAACGCCCTGTGGAGTATGGAAATGAGTCAAGTCAAAATGAACAACTTGCGGAAAGAAGTGAGCCGAGTGGAAACGCGGGAAATGTGGTTGCGAGTATGCCCGGAAGTGGATCTGTTGAAAGTGCACCTGTGGCAGGAAGTGGAAGTACAGCTATTTCCGGTTCGATACCAAACTCGGGCCCAGTGCGCCCACCTTTGTCCACAGTCTATCAACAACAGTTGCTACAGCAACAAGCTCAGTTGCAGCAGTTGCATTTGGCTCAGGCTACAGGCCTGTTGAGAGGTTCTCTCGCTTCACAACCCGTTATCCTTCTAAGACAATTATCTCAACTTAGACTTGTACAACAGCAGTTGGCCGCTCAGCAACAACTGTTGCAGAAACAGCCGCAACCAAATACAATGCAGGCCCAGCAACTTGTTCTGCAACAGCAACAGATCGCCGCCATGATGCAACAGATACAACAACAACTGATACAACAGCAACAGTtgcaacaacagcaacagcagcagcagcaacaAAGTCAACAACAACTCGGGTCCAACCAGTTTCCAACTCCAACACAACAAACATTGCTCCCAGGTCAGCCTCAACAGTTGCAGCAACTGTTGCTACAGCAAcgtaaacaacaacaaatgccTCAGCCAAGCAAACAGACTGCCCTTCAGCCGGCACTGAGGTCAACGGAACTTGAGACGACTTCAGGAGTTATTGAAGAAAATTCTGAGGTTCAATCTATTTCACCACGAACGAGTATGGCAAAGGAACCAACATCATTAGTACAGGTTGTGAACTCCGCCCCGGCGTCACCAAGCACCGGCAAATCTCGATTAGGCCAATGGACACAGAATTCTATACAGACGGAACGCCTTTCGCCCAAACTGCCTGAGAGTGGCGGGAGAGACCGAAATTTGCGGGCATCACCCCAACCGGATCTTTCCGAGAAATCCTCGCTTCTCATAAAAAGATCAACAAATTCACCGAATTCGGTTCAGACCCCATCTTGTTCGGCCAAAGACCCAGTCTCCAGTAAATGGGGAATAGACGCTGCACCGAAACTTTCTGCAGAACCACCAGAATTCAAACCCGGTGTTCCATGGCGGCCCTACCAACCTAAGACGGAGATTGGTCAGTCAGAACCGTTCGTTACTACAGCAAAGACAGCTTCTCAGGACTGGTCTGGCAGCACCATAGGTAGTCAAACAATCTCTTCTAGTTTTGTCAACACTAGTACGAACAGTAAAACTGAGGTAACTCCTCTGAGAAGTGTTCCAGAATCTCAAAATTATTCTCAGAATAATTCGTCTACTATATGGCAAGTACCACAAGTGCCGGTGACGAGACAAGCCGCTGTGCCACGATCCACTCCCCTCGCTTCAAGTATCAGACCTCCCCCCGGACTTGGGGATGAGAATAGTTTCCTGAATCTCCCAGATATGCAGAGTCAATCGGGAGACTCAAATTGGAGCGCCCGCAGTGAACCACAAATGACCAGTGAACGACGTGATCCAGGATGGCCTGGTGCCAGTGGTCAACCGCTGGACTCTTTACCTTCAGTACCGCGGGCGAATGAGCTTCATAATCTGGCGATGCTGGGAGATTCTGCAACCGATGCAAATGTTGCAGGCATGCGGGCTAAACACGAGATGTCAGGCCAGCAGCCTTTGTATCATCCCGCCATATCGACTTGGCTCGTGATTCGGAATATCAGCCAAAGGGTTGACTCCGCAGCATTACGTTCTCTTTGCCAACAACATGGACCTTTACTAACATTCCAATTAAATCTCCGTTATGGAAACAGCCTGATACGCTATGGGAATAAAGATGAGGCAGCCAGTGCTCATAAAAGTTTGAATGGTTTAATTCTGGGCGGTTCCCGTTTGGCGGCTGATTTTGCAACGGATTCAGATATCGGGAGTTTCTTTGAACAGAATTCTGATCCCACCACCACGTGGCCAAATGCACCAACGTCATTGGCTAAGACTGAACCGAGCACTCAATGGCCTGGATCCAAGCCTTTATTCTCACCTGGTAATTTCTCCTCGGAGCTTTGGTCGTATAATCAGGCTGGCGGGTTAGCGAGTGGAGTTTGGTCGACACCGCCGACCAGCCGAAGGGATGGCGAACAGTCGACGGCAGTTAACGAGAATGGCGTCACCAGCCCATCTATGGTCACATTTTTGCCCCCAGGCCTTTTGAACAGTGGCGAGTCCACATAA

Transcript

ENSAPQT00000013793

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HCJ0	Trinucleotide repeat-containing gene 6C protein OS=Homo sapiens OX=9606 GN=TNRC6C PE=1 SV=4
Q3UHK8	Trinucleotide repeat-containing gene 6A protein OS=Mus musculus OX=10090 GN=Tnrc6a PE=1 SV=2
Q8BKI2	Trinucleotide repeat-containing gene 6B protein OS=Mus musculus OX=10090 GN=Tnrc6b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008140 (this species only)

Pfam domain

No Pfam domain signature was detected for ENSAPQP00000012394.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR052068 all species →	Family	GW182 domain-containing protein	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13020 all species →	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0035195 all species →	Biological Process	miRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0060213 all species →	Biological Process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000012394.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.