Detailed information of ENSAPQP00000012420.1 in Leptogorgia sarmentosa

Genomic Location: chr17:720086...729551
NR annotation: CAB4028582.1, trinucleotide repeat-containing gene 6A -like, partial [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9HCJ0Trinucleotide repeat-containing gene 6C protein OS=Homo sapiens OX=9606 GN=TNRC6C PE=1 SV=4
Q3UHC0Trinucleotide repeat-containing gene 6C protein OS=Mus musculus OX=10090 GN=Tnrc6c PE=1 SV=2
Q8BKI2Trinucleotide repeat-containing gene 6B protein OS=Mus musculus OX=10090 GN=Tnrc6b PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008140 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00226
all species →
DnaJDnaJ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009060
all species →
Homologous_superfamilyUBA-like superfamilyInterproscan
IPR001623
all species →
DomainDnaJ domainInterproscan
IPR036869
all species →
Homologous_superfamilyChaperone J-domain superfamilyInterproscan
IPR000504
all species →
DomainRNA recognition motif domainInterproscan
IPR015940
all species →
DomainUbiquitin-associated domainInterproscan
IPR035979
all species →
Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR052068
all species →
FamilyGW182 domain-containing proteinInterproscan
IPR012677
all species →
Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13020
all species →
TRINUCLEOTIDE REPEAT-CONTAINING GENE 6Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0000932
all species →
Cellular ComponentP-bodyInterproscan
GO:0005654
all species →
Cellular ComponentnucleoplasmInterproscan
GO:0035195
all species →
Biological ProcessmiRNA-mediated post-transcriptional gene silencingInterproscan
GO:0060213
all species →
Biological Processpositive regulation of nuclear-transcribed mRNA poly(A) tail shorteningInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSAPQP00000012420.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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