Gene detail

Detailed information of ENSAPQP00000012949.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3979594.1, MAU2 chromatid cohesion factor homolog [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000014423

atggAGGATCATTTTGACAACGAAGCTGGTTATACTGCACTTTTAGGCATCGCAGACACTTATTTAAGATCAGATCCTCCGAGAATTCGTCACTGCATACATTGCTTAGAAGCTGTGTTTAGTTATAAATTACCTCCGCATTATGAAGCTCATGTACGAGTGCAGttaggaaatattttgttgaaatatacAGAAAATGTTGATTTGGCTAGATCACACTTTGAAAGATCGGTCGCAATTATTCAAACTCTTGGCCCTGGTTGTGAAGAATTGTTATGTCAAGCAGTTACTCAGCTCAAAGAAATCTATAAAATTCTTAATCAGCCCCAGTCATGTGTCCCTTACCTACAGCTGGCTTTAAAAGCGACTCAAAAGTTAAATTGTCTTCACTTGTATTACGAAACTTTGTTTGATCTTGCAgAAATTCATGCATCATGTGATGATATCCCCAATGCTATTCAGTTGCTGGTGGTTGGAGAACAATTTGCTCAACAAAATGGGTCAGAATACATGAGATACTTGTTTATGTTGAGCCGAGTTTTGTATTTATTGGTAGCCCAAGATTATAACCAGGCCTCAATGCTGTTAGGAAATTTTGGGGCATTTTCGGAAATGTGGAGAGGAATACCACTGCAAGTTGAACACATTAGAATATTTTATCTTGCTTTACAAACTTGGTTTGGTATTGCCTCTGGTCAGCCAAAAACAATGAGGTTACACATTAAACAACTGCAGCAAAGTATTCAAGTTCTCACCACTTTTGAGCCAATAGAAGGAGCAAAAGTACCAGAATATGAGAAATTTCAATGGCTGCCTGTTGATCATCTTtgcattgtagtttatttGCTAACTGCAATTCATTGTATGCAAGCTGGACATGTTGGGAAGTCACTCAAATACAGTGAAAAGGCATTGGGAAAGATAGCTTCTTTAAAGGAAATGCAACCATGTCATTTGCTTTCTGTATTTGAACTCATGCtgttggaaaatgtgattGTAACGCACGTCATTGAGGGGAAGTCAAACGATGCTATCAAAGAGATTGCTGCTGGCTTCCGTGCTTGCCTTCCTCATTCAAGACTTCTAACTACGCACAGTGCGATGCTTCATACCCTACTGGGATTATACTCGATGTCTATGAACCAAATGGAATTTGCGGAGTTCCAGTTTAGAGTTGCGCTGAGGGCTTGTGTAAACACTGAACAGTATTCGTTAATTGCGCTGAATCTTTGTGTGGTGTACATCAGAATGGGGGATTCTCGCAAGGCCAAGCTAGAAGAGTTGATACAGAATTTTTCAAATCCAAAACGAGCGTCATTGAGATCTGGCAATATGTTGGCTAGCTACCATTACATTATGGGGCTGAAGGCTTTCTTCGAAGCGAAGTACCAAGATGCAAGACGCTGCTTACGCGAAACgctaaaaatatcaaatgcaGAAGAATCACATCGACTCACCGCATGTGCTTTGATATTACTGGGACACACGTTTCTTAAGACTGGGAATTTAAAGGAGGCGTTGGATATGGTGAAACCTGGCATGCAGATGGCTGAAAAGATGCCTGATGCGTATATTCAGTTGTGGGGTGCTTCGCTGCTTCGAGATTTGTATCGAGTTATGGGTGACCATACAAGGGAATCTGAATCATTTCAAATCCACAGCGGTTTCACAAAAAGACTTCTTACCAGTCATGGTGAAGCAATTCAAAGCAAAGAACATAAACTGATTGAATGGCACAAAGGAATACCGAATCTTCCAGTCGAAGAAGGAACGTCACAGGGCCTGAGTTACCAGGCCACACAACAACCTTCAACGAAAAACAGGTTAAAGGGGCCGCAAGTTTCTGAAAGTACTAAAAGAAAGAGAGATATAGCAGATGAAAAAATATCTGAGGAAGTAGCAACTGAACAAGCAACAGATATTCATGATGCAATAGATAATAAAACAGAAGCCAAAGAAGAGAACACAAACGCTCCTTCTCCTAAACGAACAAAGGAAACAGATTCTGAATCTGATTCTGACTGCATATCTCAAGAAGATCTTCTTGCCCAACTTGGACTGAACTCGGTGAAGAAACTTCAGACAGTTGAACCAGATCCAAACCGAGTTGTTGAACCAGAGCCACCAAAGCAGTCGATCCTTGATCTTCTAAAACAACCTTGCTCGAAAAAAGTAATGCCATCTGCTGCAATGCCAAATAAGGAAAAGCCACTGACCAATGGCAGCTTTGTTGAACGCCAAGAAGATATTGAGAATATCGAAAGCAAAGAAAAGTTAATCCTTCGTTTGCAAAGTAATTTACGAAATGAGGAAGCTAAGCTGATGTTGCTGAGAAAATTGTACAATTGCCAAAATGAGAAACCAACAAAGGAGGCGAATCCTGTGAGAACAGTTTCAGCAACCCTTGCAACAACAACCCAAGCTTCATCTAATACAACCACAAGTCTGAGAAAGACTACAGTAGCGGCAGCCTCGCAGAAACAgcaccaacaacaacagaaggGACAGAAACCAGTGACAAAGTTGATACAGAAAACCAGCAAACCTTTGCCGCCAGTGTTGGTACAAAAACCAGCACAGACTGTTCCACCACGTGTAGTGTTCATTAGCAGCCAACCTCGTGTTCCACAACCTGTCATCATTGCTCCCAAGCTCGTCCCTGTCTCTGATGCCAAACGTGACAATCGACAAATGAAAGTTCATGTGGTGAACCCTGGAACGACTAAAGCAACTTCCAAATCTCATCCTGTCTCCTCTACTGCAGTCTACACCCACACTTCATCCAGCTCAAAACGACAGGCTGTTCAAGTTGATAATGGCCGCCCTGCAGAAAATGGTGTACCAAAACCTGTTAAAAAGATGAGAAGTCCACCCACACCAGAGCAATCTCACGCTGAAGCGAAGATGGCACTTCGAAAACAACTTGAGAAAACCCTGCTGGAAATACCTCTCCCTAAACCACCTGTTCAGGATTGGAATTTTGTTCCTAGTGTCAATACCCAGGATTTTACAATACTTGTAGGACTTGAAGGAGTTGTGAATCACATCATAGAATCCCAAGCAATGACCACCAACCCAGACACTGCAAAAGTCTTTGTGCCTCCAAAGTTTTGCTCGCAATGTGACACTGACTTTACTCCAGGTTGGAGAGCGAAAGACAAGGATGCAAACGAGGGCACGTTATGTGAGTCGTGCTacatgcaaaaaatcaaaagaaCGTTGAAAACGGAACACACAACACGCTTGAAAGATGCGTTTATGAAAGCGCTGAAACAGGAACAAGAGGTGGAGAAAAAGTACCAATTATCTGGTGTGTCTGTATCCACTGTGTCTGTAGGAAAGTCTAGTGCGACAGTGAAACCACAACCTGTGCGCGCTTCCTCACACCAACCCCTCCACCCGCAACACATTGTGTATCACCCAGTGCATTCCATACCACAGCCAGCACAAGTGTATCAACCGCATCACTCCATTGTACATcaattacaacaacaacagttaCAGCAACAACATCAAGAATTAGACAGTCCACATCGACAAGAACCTGCAAGATACTTCACCTACGTTGGTCAACCTCAACCAAAGCAACGACATAATTATACAGCAGATAATGATCGACAGCGAGAATATCTGTTAGATATGATTCCTTCAGGCCACTCATCCAGAAGTTATCGAATATAG

Transcript

ENSAPQT00000014423

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SUU7	MAU2 chromatid cohesion factor homolog OS=Nematostella vectensis OX=45351 GN=v1g174619 PE=3 SV=1
B4ZIX8	MAU2 chromatid cohesion factor homolog OS=Xenopus laevis OX=8355 GN=mau2 PE=1 SV=1
B1H1Z8	MAU2 chromatid cohesion factor homolog OS=Xenopus tropicalis OX=8364 GN=mau2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005483 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10345 all species →	Cohesin_load	Cohesin loading factor	Repeat	Interproscan
PF16563 all species →	P66_CC	Coiled-coil and interaction region of P66A and P66B with MBD2	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019440 all species →	Family	Chromatid cohesion factor MAU2	Interproscan
IPR032346 all species →	Domain	Transcriptional repressor p66, coiled-coil MBD2-interaction domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21394 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0007064 all species →	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0032116 all species →	Cellular Component	SMC loading complex	Interproscan
GO:0034088 all species →	Biological Process	maintenance of mitotic sister chromatid cohesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000012949.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.