Gene detail

Detailed information of ENSAPQP00000013185.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4007883.1, 2 -5 -oligoadenylate synthase 1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000014681

cgCACCTGAGGAGCCGCTTCAAATATTGTGAACTCTCGTTGAAGATTTTCGTCCAATTGAAGAATTGCTGCAACGTTTCCACACCTGAAAAGAACAGGACATTGAATTGGGGAAACAAAAGCGAGGAAAAACGACTGGAAATGCGACAATAGTTCATGTTTTCAACGACTATAAGTCAAAGTTACACGGCGATGTTTACAACACAATTTCGAAATCAAAGCACGCGTGTCCACTGGCATCAAAAGTGATCAAAGTCTTCCTGTCTCGCCCAGACACAGACACAGATATAGTGATATCTGATGAATATACAGATCGAAGAAAAGCACAGTGTGTTTCTGGATGAAGATGGCTTCCTTAGTGTTCATGTTTTTGTCGAAGATGCAAATCTTGTTTATGATCCGTTGCTGGACCCACTCACTAAGCTCAGTGTCTCGAAGTTGCGAGAGGAAAAAGAACAAAGACTTCGGAATCTGGAACGTGAATGCGAAAGCTATATCGAAAATACCGTGGCCGAGAAAGATGTGATCATTTGTGAGCAAGAGGAACTCCTTGAAGAAAGGGAAAGTATCATTTCGAAACAAGAAGGACATATTGCTGGATTGGAAACAGAAATGGaagaaaatgataaatatCTTAGCGAACTTGTTGATGGAAAAGGACAGGATGAAGCAAGCCAACTCTTAAAACGAAGTCTTCGACAATTAATCAAGAATGTCAAACCAACGAAGGATGATATAAAAGCACAGAAAACCGtggaaaagaaattaagtAAATTTCTAAAGAAAAAACTTCCATTCAACATTAGTCATGTGTCCGCCGCGGCTGCTTATGGCCAGAACACAACCTTGAAAGGAGGAAGGGAATGTGATCTTGCGATCGCCATTCAAGATCTTCCTCGTACAGAACACGACAGTTGGCTACCAACCATAGTTGGTACCATCAAGACTTTACTCAACCAACGAGACAAAGGTGATACGTCACTTCCGCCATGTACTGAGTTCAGCACCACATCCACCACTGTTAACTTCCGGTGTGCTGACGTGGATGTTGTACTCATGCCGATCAATGACTGGGAGAAGAATGGTGGGTTCCAGGCCCTTTATCAGATGAGCATAAAGCAGAGTGCAGATGTCCTTGTTCATTATAACAATAACGTATGTGAACTACAAGCAAGATTTATCGCGAAGCAAGCGGACAAGTGTAAAGATTTAATAAGAGTCGTGAAAAAGTGGAGTCGTGATACGGAATGGAGTCCTGGGTCCAAGCCAAATGATTATCTTCTATCATTGCTTGTTATCCAAGCCTACGAAGTTGTGCAACCGGAAATGTGTGAACAGTCGTCAGCTGATCTGGATGTGCTTTTGGAGATGGCAGAAATGGTGAATGATAGTAACCTTGAATTATCATGGGATACGGACAATTACATTTCCGCACAATATCCACGTCAGTTTTTCCCAAGACAGTTCTCATCACCCGTTGTTCAGGATCCAGCCATTCCCACCCACAATGTCGCCGAGACTGATATGGAGGACTGGGACGAGTTTAGAAAAAAGTTCAAGAATTGGGTCATCTCTTTATCGCCGTGAAGAATTTCAGAAAAATCACAGGAATACACTTCCGGTTTGTGGAAAATGgacttggggggggggggggggtagttGATTGGTTTGGTGGGGGAGGATTGGGTGAGGGAAGGCCCTGGTGCGAAAGCTGTGAATTTTCCTAAAACTTAAAAATCTCCATATTATATCGAGTACTCAAAATCTTAGAAAAATATGCCAAAAGACTTCCTGGAAATGgaagattatttatttattttatatggTTGAAAGTCGGCTTATAAAGATTTAAAGTAGTCAAATTAATTATTAGCTTGGGTAAATGCTAAACTGCATGCTAAAATATGTGTTTTGTCATGTGAACTCGCTAAAGTTCTAATTCTAGGAAATTGGAATATCAATTCAGGTTTGTATACCATACAGTGTTTAATGACTGGCGCGCAGTATTTCGGCCTGGACACTAGTGTTActttcagccaatcaaaattgagcaTTTGTGTCACAAGATTCAAATGCCGATAAACGCGTACGAGCGAAaagaatttcaatatttttgttgattttaaCGCTGTTTTTTTGCCGAGTTTTAAGCCTACTGTTGTTGTGAAGTTAAGGAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002254 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10421 all species →	OAS1_C	2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018952 all species →	Domain	2'-5'-oligoadenylate synthetase 1, domain 2/C-terminal	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11258 all species →	2-5 OLIGOADENYLATE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001730 all species →	Molecular Function	2'-5'-oligoadenylate synthetase activity	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0060700 all species →	Biological Process	regulation of ribonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09338	HD-ZIP; homeobox-leucine zipper protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.