Gene detail

Detailed information of ENSAPQP00000013275.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3986088.1, Nuclear cap-binding subunit 1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000014779

ATGAGCAAAGTTTGGAATGCGTCTTCACTTCAAAAATGTACAAGCATTTTCTGTTGTGCAAGTGCAAGGATGAATAGAAGACGTTATGAAGACAGAGAGCGTGATGACGgAAGAAACAGGAAAAGACGGAAAATTGATCCCAATGACGTTGAAGATAAACTGGAGTCATTGATCAGTAAAGTTGGAGAAAAGAGTTCTGCATCTCTTGAAAGTAATTTGCAACAACTGGCAAATGTCTTGGAAGCAGATTTATCAAACTATAaagaaagaattttaaaaattatttgtacATGTGCTAGTAACTTTCCTGATAAAATCAGTGTGTATAGTACTCTTGTTGGCTTGCTAAATGTGAAGGATTATAAGTGTGGGGAAGAATTTCTTGATTTAATGGTGgatgatttgaaaaatgttctAAAGTCTGGTTCATTTGAAAGAGCACAGTTAATGATTCGGTTTCTTGCGGACTTGGTAAACACAAGAGTTGTTGTTCCTTCGTCATTGATGAATCTCTTCCTCAACTTCTTGGCTGTTACAATGGAGGATGATATTATACAAGTTCGCTCAGATTGGTTTGTTCACACTGTTTTACTATCTCTTCCTTGGGCTGGCAAGGAACTGTGGAGCACCAGAGCCTCAGACTGTGATAGATTGTTTAATAAAATTGAACTGTATTTAAATAATCGTCAAAAGACTCATGTAAATGGTTTGAGAGTTTGGTCATCAGATCACCCTCATTTACAGGAAGAGTATCTTGACTGTCTCTGGgctcaagtgcaaaaacttaaGAATGATAATTGGGTGGAGCGTCACATCAGAAAGCCATACTTGGCATTTGCAGAGACATTTGCTGAAGCTTTCCAGCATCCACTACCAGATATTCCAATTTTACCTCgtgaagaaaatgttgaatatcCTCATCCGCAAGTTGTGTTTCGCATGTTTGACTACACTGATGTCCCTGAAGGACCTGCTATGCCTGGAGCTCATTCTATTGAGAGATATTTGGTAGAGGAAAGTTTGAACAGAATTATCAGTGCACATTACAAGAACAAAAAAGAATGTGCTGCACAGTTAATGAAGTTTCCTGAGCAGGACAAAATTCCTTTGGAGTACTGCATTATAGAGGTGATATTTGGTAATTTATTTCGACTTCCAGTCCCTCCACACTTGGAGTTGTTCTATGGTTCTCTTCTTGTGGAGCTTTGTAAACTTCAACAAGCCTCCATACCTGGTGTTCTTGCACAGGCCACTGAGCTTCTATACGAAAGAATTGATACCATGAATACAACATGTCTTCACAGATTTATCAACTGGTTGTCATACCACTTCAGCCAATTTCAATATAAATGGACATGGGAAGATAGAATCAACCTAACAGAGGCAAATGCTGATTCTCCGCACAGAACATTTGTAATTGAAGTCTTGGGAAAATGTTTACGctCGTCCTATTACGAATTTATCCTACAAGTTGTTCCAGAACCACTTCATGTTCTTATTCCACCAAGACCTGACTACTCTTACAGATATGAGGAGAAATCAGGTCCTAGTCCTGGTCATGAACATGCTAAAGGACTGGTAGACTCCATCAAAGCAAGGAAACCAATGGATGAATTATTAATGCTGGTCAACAAGATCCCAAGCTCTTCATTAGATGAAGAAGACATGGAATATAGCCAAGATGATCCTCATGTTCCCTCTCTCAAGATTGATGTCTGTTTCCAAGTTTTGCTCAGAGCTGGTGCTAAGTCAGTCAGCCATACTTTCAAAGCATTGGATAAATTTGAAAAGTTGTTGCGAAGTGCAGTCACAAATGAGGTTGAAGAACAACATTGTCTTGGAGTGCTACACTCATTTTGGCAACTTCACCCACAGATGATTCACATTGTGACAGAGAGACTAATCAGAATGAAGATTGTTAACAGTAAATCATTTATCAACTGGCTCTTTTCTAAAGAAATGGctaatgattttcaaagGTTGTACTTGTGGGAGATTCTTCATTCTATACTTAGGAAAGTTACAAAACAAACAGAAAAGAACAAGGGACCTTTGGAACGAGAACGGAAACAGTTGGAAAGAATGGAAGATAAACGGCAGAAACAAGAACATGAGAGTGGTGCAGCGGATATCGGAGATATTGAAATAAAACGTCATGAAGTTGAAGGACTAACAAACCAACTGGAGGATATACAGAAAGACCAGAAAGAAGTCTTTCTAGCTGTCTTTCAACGGTTTGTGATGATGCTTAATCAACATTTGGCACAATGTGAAGAGCAACAGCAGGAAGTGAACTCACCCACCTTCACCGCAATCTTAGACAGACTacgagaaattttttatacgTACCATCGTGAAATCAAGCCATATACTTCGACTTTGGATACACTTCTGTCTGATATGGATCATCGCATTCTTAATATATTCAATCAATACAGAGCTCTTAGCACCTAA

Transcript

ENSAPQT00000014779

TCTTTTTTATCAGAACAATGAATGAGCAAAGTTTGGAATGCGTCTTCACTTCAAAAATGTACAAGCATTTTCTGTTGTGCAAGTGCAAGGATGAATAGAAGACGTTATGAAGACAGAGAGCGTGATGACGgAAGAAACAGGAAAAGACGGAAAATTGATCCCAATGACGTTGAAGATAAACTGGAGTCATTGATCAGTAAAGTTGGAGAAAAGAGTTCTGCATCTCTTGAAAGTAATTTGCAACAACTGGCAAATGTCTTGGAAGCAGATTTATCAAACTATAaagaaagaattttaaaaattatttgtacATGTGCTAGTAACTTTCCTGATAAAATCAGTGTGTATAGTACTCTTGTTGGCTTGCTAAATGTGAAGGATTATAAGTGTGGGGAAGAATTTCTTGATTTAATGGTGgatgatttgaaaaatgttctAAAGTCTGGTTCATTTGAAAGAGCACAGTTAATGATTCGGTTTCTTGCGGACTTGGTAAACACAAGAGTTGTTGTTCCTTCGTCATTGATGAATCTCTTCCTCAACTTCTTGGCTGTTACAATGGAGGATGATATTATACAAGTTCGCTCAGATTGGTTTGTTCACACTGTTTTACTATCTCTTCCTTGGGCTGGCAAGGAACTGTGGAGCACCAGAGCCTCAGACTGTGATAGATTGTTTAATAAAATTGAACTGTATTTAAATAATCGTCAAAAGACTCATGTAAATGGTTTGAGAGTTTGGTCATCAGATCACCCTCATTTACAGGAAGAGTATCTTGACTGTCTCTGGgctcaagtgcaaaaacttaaGAATGATAATTGGGTGGAGCGTCACATCAGAAAGCCATACTTGGCATTTGCAGAGACATTTGCTGAAGCTTTCCAGCATCCACTACCAGATATTCCAATTTTACCTCgtgaagaaaatgttgaatatcCTCATCCGCAAGTTGTGTTTCGCATGTTTGACTACACTGATGTCCCTGAAGGACCTGCTATGCCTGGAGCTCATTCTATTGAGAGATATTTGGTAGAGGAAAGTTTGAACAGAATTATCAGTGCACATTACAAGAACAAAAAAGAATGTGCTGCACAGTTAATGAAGTTTCCTGAGCAGGACAAAATTCCTTTGGAGTACTGCATTATAGAGGTGATATTTGGTAATTTATTTCGACTTCCAGTCCCTCCACACTTGGAGTTGTTCTATGGTTCTCTTCTTGTGGAGCTTTGTAAACTTCAACAAGCCTCCATACCTGGTGTTCTTGCACAGGCCACTGAGCTTCTATACGAAAGAATTGATACCATGAATACAACATGTCTTCACAGATTTATCAACTGGTTGTCATACCACTTCAGCCAATTTCAATATAAATGGACATGGGAAGATAGAATCAACCTAACAGAGGCAAATGCTGATTCTCCGCACAGAACATTTGTAATTGAAGTCTTGGGAAAATGTTTACGctCGTCCTATTACGAATTTATCCTACAAGTTGTTCCAGAACCACTTCATGTTCTTATTCCACCAAGACCTGACTACTCTTACAGATATGAGGAGAAATCAGGTCCTAGTCCTGGTCATGAACATGCTAAAGGACTGGTAGACTCCATCAAAGCAAGGAAACCAATGGATGAATTATTAATGCTGGTCAACAAGATCCCAAGCTCTTCATTAGATGAAGAAGACATGGAATATAGCCAAGATGATCCTCATGTTCCCTCTCTCAAGATTGATGTCTGTTTCCAAGTTTTGCTCAGAGCTGGTGCTAAGTCAGTCAGCCATACTTTCAAAGCATTGGATAAATTTGAAAAGTTGTTGCGAAGTGCAGTCACAAATGAGGTTGAAGAACAACATTGTCTTGGAGTGCTACACTCATTTTGGCAACTTCACCCACAGATGATTCACATTGTGACAGAGAGACTAATCAGAATGAAGATTGTTAACAGTAAATCATTTATCAACTGGCTCTTTTCTAAAGAAATGGctaatgattttcaaagGTTGTACTTGTGGGAGATTCTTCATTCTATACTTAGGAAAGTTACAAAACAAACAGAAAAGAACAAGGGACCTTTGGAACGAGAACGGAAACAGTTGGAAAGAATGGAAGATAAACGGCAGAAACAAGAACATGAGAGTGGTGCAGCGGATATCGGAGATATTGAAATAAAACGTCATGAAGTTGAAGGACTAACAAACCAACTGGAGGATATACAGAAAGACCAGAAAGAAGTCTTTCTAGCTGTCTTTCAACGGTTTGTGATGATGCTTAATCAACATTTGGCACAATGTGAAGAGCAACAGCAGGAAGTGAACTCACCCACCTTCACCGCAATCTTAGACAGACTacgagaaattttttatacgTACCATCGTGAAATCAAGCCATATACTTCGACTTTGGATACACTTCTGTCTGATATGGATCATCGCATTCTTAATATATTCAATCAATACAGAGCTCTTAGCACCTAAACTTGCAAATCTTACTCAAGAAGGACGACCAAAGGTAACTGAGATAGAAGTTGATTGGAGGATTTTGAAGGATGGAAAGAAGAGAACTCACACCGGACCAGGTTTGCCCTAAGTGAAGTGTAATCATGGCCTTTAGTACCACCAATTTTCACTACAGGAAAGGAGTTGATTAGTGGACCAATCTGGGATTACAAAATCGTCTGTACATAAAAAATGATTCGCAGATTTTTACCTACCTCAAAccttaaaaagaaaatttgcttCTAATTGGATTTCCATGAAATTTGCAGGGCTAGTCATTAACAGTATTGAGTGATTTGTATGCTGCTTTGTAATATTGCTTGCTTTTAGTCTTTTCCAACCAATTATCAATGTATGTTTCAGTTAAATACTGGCAgtgatatttatttatttctgtTTCCCTTTTTTCTGAAGAACGGCAGCTTACTGCCAAGCCCTTGTAATCCTAGATAGATTTTCATGAATAGTCCAGGCTCAGGCGTATATTCTTTAAGCTCAGTTTGTGGGTGTTTTTCTTGCAGTTCTTTTATAATCAGGTCGCGTAGAGAAGGTTTGCTTTTGGGAACAGAAGGCTTGATGTTGTGCAATAACATTATCTCCTCATGAAAGTGCAGAAGTGAAGGAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DIE2	Nuclear cap-binding protein subunit 1 OS=Xenopus tropicalis OX=8364 GN=ncbp1 PE=2 SV=1
Q6GQ80	Nuclear cap-binding protein subunit 1-A OS=Xenopus laevis OX=8355 GN=ncbp1-a PE=2 SV=1
Q09161	Nuclear cap-binding protein subunit 1 OS=Homo sapiens OX=9606 GN=NCBP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003799 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02854 all species →	MIF4G	MIF4G domain	Repeat	Interproscan
PF09090 all species →	MIF4G_like_2	MIF4G like	Repeat	Interproscan
PF09088 all species →	MIF4G_like	MIF4G like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027159 all species →	Family	Nuclear cap-binding protein subunit 1	Interproscan
IPR003890 all species →	Domain	MIF4G-like, type 3	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR015174 all species →	Domain	MIF4G-like, type 2	Interproscan
IPR015172 all species →	Domain	MIF4G-like, type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12412 all species →	CAP BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0000339 all species →	Molecular Function	RNA cap binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005845 all species →	Cellular Component	obsolete mRNA cap binding complex	Interproscan
GO:0005846 all species →	Cellular Component	nuclear cap binding complex	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016070 all species →	Biological Process	RNA metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12882	NCBP1, CBP80; nuclear cap-binding protein subunit 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.