Gene detail

Detailed information of ENSAPQP00000013346.1 in Leptogorgia sarmentosa

Genomic Location: chr17:528032...531554
NR annotation: CAB3980708.1, Ubiquitin domain-containing UBFD1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSAPQT00000014857

CAAAGGATTAGTCTAAAAATAATGACAATCTATTGATTGAACCATTTCAATGATTGTCGattgatttattaatttttcaatatattatttCAATCATTCATGTATATATTAGTAAATAACTATTTATTGGTTTATATAttcccaataaaataaattgatcAATCGATTATCGGTGACCGTCTACTTTTCTAAGAAACAAATTCTAGGAAAACTTCCAAGAATCtagaataattaaaaattccGTTCTCCGCGCAAAGCCTGGAATCTAGTCATGAGGAAAGATGGCGGATGATTCATCGTGTGGAGGAGAGCGGTGCAGTGAGGCGATGGAAGAAGGACAACCTTGTACTATTgaagaacaaaatgaaactAGTGCAAATGAAGTAAAAGATGTAACCAACGAAGATGTAAAATCAACGGATGTACCAAATTCCAGTGATGAGATCCGACCTTGTAGGACCGAAGAAGAAACCACTTGTACCACAGTGAACGACACAGAAGGGACGTCTTCAGAGAGTACTGAAACAACGTGCCCTGAAAATATGATCAGTTTTCGTGTTGTTTGGAACAAAAAGAACTACGACATCACCTTCAACGCTAACGACACTGTAGCAAACTTGAAGAAACATATTGAGTCATTAACAGCTTTACCAGTCACAATGCAGAAGTTAATGTTCAAagGTTTAGTTAAAGAtgacacaaaaacattgaGTGATTTGAAAGTAACGAACCATGCTAAAATGATGGTGATTGGTTCAACCGTCAAAGACATCATGACAGTGAACATTCCTCCCAGTGCAAAAACATTAAAAGAGGAAAGCACGGCTACAGCTTCTACAAAGGAGCCTTGGTCGAAACAAAAGATGCATAAAAAAATACTGGACAAAGGAAAACCAGAAGATGCTATGCCTGGAGATAAGTCAAGAAAGGAACCGCTACCTCATCAGCCTATCTCAGGGATGTTAAATAAAGCAGCAGGAAAAGTTAGATTAACATTTAAACTTGAGGTCGACCAACTATGGATTGGTACCAAAGAAAGAACAGAAAAAGTATCGATGGGTTCTATAAAGAACGTTTTATCAGAGCCCATAGAAGGCCATGAAGATTATCATGTATTGGCAATTCAACTTGGTCCTACAGAAGCCTCACGGTATTGGGTCTACTGGGTACCAGCGCAGTATGTGGATGCTATCAAAGACACTATCTTAGGAAAATGGCAACCGTTTTAGCAGGAGGTGTAAGTGTGTTATGTAGTCTCCCCCTACACTGTATGTGGTGGTCCTGTATTATACAATAAGGTGCCGTGGGTTGTCTCTAAAATACCTGAAAGTCGTATCCAATAAGTCTGACAAAAACCACCGCAGCTTGTTGTGCAATACTAAGTACGCAGAATGACCATGTTTGAGATGTGAGAATGTTGTCGTTGCTTGAGTATAAAACTATAGCTATGAACCCATAGTTTTTTGTGACGGATACTACAATAGAACATAAAGCGACAATAGAGTAAAGCTTGCTTTTAGAGAGTTTGCATATGTTATGAAGAAGATTGTTCTTGCAAGAAAAGACGAGATGATGTTGAAAGATATAAAAATTTATTGCAGAGCATTTGTTACAGGTGTGACATGGTATGTAGTATGTGATTATGCACTTTGCCTTGCTAAACTGCTTATCAAACCCAGTTGGCTCAATATTCTACTGTGTTGGTGGCTACTATTTCCATCAATTATTTAGTAAACGTATTGAGCCTACTAAGTTTTTTGAACTGTTGTGTTCATCACTGCTATTCCATATAAATAAAGACTAcctatttttaaatacattGCCATAGACACTATTTGTTTAGCAATACTTTGCAGCTATTACCACTCattgttcattttcttcagTCGAAGCCATTGCCTGTAAAAGAAACAATGTAATATAGGCATGTGCTACCTGAATTTGCATAATTCAAGACCAGCATTATTTTTACCTGTTTTAACAGTTGCTGTCCCAAGAAATTTCCAGCCATGCTTTTCAGCTTCTTTGATGCATCTTTCTTACATTTTATGTAGCCAAAGAGATTGGCTGAACTTAAACTTAGAGCCACAATAACTATGAtctgaaattgaaatattg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14562	Ubiquitin domain-containing protein UBFD1 OS=Homo sapiens OX=9606 GN=UBFD1 PE=1 SV=2
Q78JW9	Ubiquitin domain-containing protein UBFD1 OS=Mus musculus OX=10090 GN=Ubfd1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007435 (this species only) · gene tree & orthology
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR019954 all species →	Conserved_site	Ubiquitin conserved site	Interproscan
IPR039120 all species →	Family	Ubiquitin domain-containing protein UBFD1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16470 all species →	UBIQUITIN DOMAIN-CONTAINING PROTEIN UBFD1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20462	OSBP2, ORP4; oxysterol-binding protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.