Genomic Location: chr17:918640...923571
NR annotation: XP_028413166.1, ribonuclease H2 subunit A-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families
| CDS |
| ENSAPQT00000014951 |
| Transcript |
| ENSAPQT00000014951 |
| Protein |
| ENSAPQP00000013433.1 |
| UniProt accession | Description |
|---|---|
| Q2TBT5 | Ribonuclease H2 subunit A OS=Bos taurus OX=9913 GN=RNASEH2A PE=1 SV=1 |
| Q9CWY8 | Ribonuclease H2 subunit A OS=Mus musculus OX=10090 GN=Rnaseh2a PE=1 SV=2 |
| Q5U209 | Ribonuclease H2 subunit A OS=Rattus norvegicus OX=10116 GN=Rnaseh2a PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005677 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01351 all species → | RNase_HII | Ribonuclease HII | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR024567 all species → | Domain | Ribonuclease HII/HIII domain | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR023160 all species → | Homologous_superfamily | Ribonuclease HII, helix-loop-helix cap domain superfamily | Interproscan |
| IPR001352 all species → | Family | Ribonuclease HII/HIII | Interproscan |
| IPR004649 all species → | Family | Ribonuclease H2, subunit A | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10954 all species → | RIBONUCLEASE H2 SUBUNIT A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004523 all species → | Molecular Function | RNA-DNA hybrid ribonuclease activity | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0006298 all species → | Biological Process | mismatch repair | Interproscan |
| GO:0032299 all species → | Cellular Component | ribonuclease H2 complex | Interproscan |
| GO:0043137 all species → | Biological Process | DNA replication, removal of RNA primer | Interproscan |
| GO:0016070 all species → | Biological Process | RNA metabolic process | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10743 | RNASEH2A; ribonuclease H2 subunit A | EC:3.1.26.4 | DNA replication proteins | ko03032 | deepkoala |
Genes whose expression across the transcriptome samples of Leptogorgia sarmentosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptogorgia sarmentosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
