Gene detail

Detailed information of ENSAPQP00000013680.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3986037.1, cleavage and polyadenylation specificity factor subunit 4-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5FVR7	Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus norvegicus OX=10116 GN=Cpsf4 PE=2 SV=1
O19137	Cleavage and polyadenylation specificity factor subunit 4 OS=Bos taurus OX=9913 GN=CPSF4 PE=1 SV=1
O95639	Cleavage and polyadenylation specificity factor subunit 4 OS=Homo sapiens OX=9606 GN=CPSF4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007834 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF18345 all species →	zf_CCCH_4	Zinc finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR045348 all species →	Family	CPSF complex subunit CPSF4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23102 all species →	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0098789 all species →	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14404	CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.