Gene detail

Detailed information of ENSAPQP00000013714.1 in Leptogorgia sarmentosa

Genomic Location: :...
NR annotation: CAB3989264.1, RNA-binding [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSAPQT00000015252

ATGGAGAATCAAAACAAGTTTCAAGGATTAAAAAATCTGCACCAAAATCTACATTCAAGAAAAGGACTTACGAATATAAACTCGGCAGATAATGCGTTCTGTATTGACTCAAAACAAACTGTTTATGCGGGCAATAATTTTCCAGTAGATGGTCAAGAAATGGAGGGAAGAGAGAGAAACCCAGTGAACGAGACGAACAATTTACTAAAAGCTGTTAAAAGCGTTTACGTTGACAACAATGTTGAACTATCACAgccgaaaatttttgttggaAATATAAGTTACAAGTTATCAACATCACAGTTGAAggaatttttttcaggttttggTAGGGTTATTTATGCACAGATTGTGAAAGATAGGGTGAAGAAGCGCTCTAAAGGCTATGGTTTCGTGACATTCAGCAATGAGAGTGAAGTTCAGAGAGTACTGGAAGCAGAAGATGATGAACTTATCTTAGATGGAAGGACACTGAGGGTGAATAGAGCAGAGAAAAAGAGAAGATCAAGGCCAGTACGAGAGAGCAACGATGAAAACAACCCCAAGAAATCGCTAGAGGAATATGTTCAGAAGTACATGGAATCTGTTGAATCCCCAGAATGTGATCAGTTTGAAACAGATGAAGAAAATGATCATGTGTATTTCTCACATCTTAATGATGACATACTGTTGtacatttttatgtttttaactATAAAAGAACGTGTTAAAATTGAAAGAGtTTGTAAGAGATGGCATAATTTGGCAACTCAGACATGGTTGACTGTAACACACCTGGATTTTAAAGGCGTGTTTATCTCTTTCCCCCAAGCTTTAACAGATCGTATTTTACACTCGCTGTTCAAGAAAGGatgtcaaaatttaaaatctctTGATTTATCTCATTCATCAAAACTGCTAACAGACTACTCGCTCTACCTCATTGGTCAAAACTGTCCTCAACTGCAAGAGGTTAATTTGTCTGGAGTAAATGTGACCATGAAATCATTAAAAGATATGAGCAGCAAATGTTCCAAGCTCAAGAAAATAAAGTTACAAAGATGTTATGAAGTGGGCGAAAAAGCATTATGGTGGCTTTTCAAACAATGTACAGACCTTGAATATATTGATATTGGAGGAAATATCAGAATTACTGGACAGTGTTTCTTTATGCTGACTGAAAAATGTAAAACGTTAATGGCAGATGATTGCATGAAGTTGACAGACAGTGGTCTACAGTTCATAACAAAAAGATGCAGTTCTCTTGAAGAACTGAGCATTTCGCACTGCTTGACTTTGACTGATGCTGGTATTACAGACATATTTAAACACTGCACAAACTTAAGAAGATTTTCATTCTCCGACCCTCCCAAACGTGAAGTTACAACTCAAAGTCTTTTGGCATTACGATATTCCACTCAATTGGTAAAGAATGATGTGTGTGCTGTAGAACCTAACATTATCAAGCTGTTGAACCTAGAAGCTTGTCATAATGTGACAGACTATGGCATTCAGAGTCTTACAGCTTGTCTGCAGCTACACAAATTGATAATAAGTTACCTTGACAAGGTAACAAATGATAGTGTGGAAGCTATTGCTCAGAATGGAACTCTGAGAGAGCTGACTGTTCGTTCATGTAATATAACTGACAGAGTGGTTGAGCAGTTGGCCTTACATTGTCCACACCTGCAAGAACTGGATCTTAGTGGATCAGAGTGTATAAGGAATCGATCGCTGGATGTCTTAGAAGAACACATGGGGGATAATAAGGTTATGGTGATAACAGTTGGAGGTACAGGCATCACAATGGAGAGAGTATCAGAAACACAAAAACGTCACCCTAGCTGGGTTGTGACAACACAAGATCTTTCCGATCACCATTTGCGTGTGGATTTTGATCCTTACATGGATATGGGTCCAATCATACCAGAATACAGTGACAGTGATGAAGGACCTTTTCAATTTGATGGAGATGTTGATTATGATGCTGAAGATTACTTAACAGCTGATGATCCTGCTATGTGGGAGTATGAAGAACAGTGGATGTCTTAA

Transcript

ENSAPQT00000015252

Protein

Uniprot

Gene family

Uniprot term	Description
P28644	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1
Q925G0	RNA-binding protein 3 OS=Rattus norvegicus OX=10116 GN=Rbm3 PE=1 SV=2
W8E7I1	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050648	Family	F-box/Leucine-rich repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan