Gene detail

Detailed information of ENSAPQP00000015358.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028413147.1, tRNA-splicing endonuclease subunit Sen54-like [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000016969

TGTcactttattttgttgtttcaacATGGAATCAGGGAAAAGTGGAAAACCCACTGCAGTTTGTTGCTGTTGTGAGAAATGATACCGAACGGTATACGAAACGgtacgggacgaaacggtatgggacgaaacggttacgggacgaaacggttacgggacgaaacggtatgggacgaaacggttacgggacgaaacgaccATAAATCGTGAAGATAATTTAGAATATTCTGAGAACTATTCTGCTTCATGGAATTTCACAAAACCCCTGAGGAGTTGCAAACACTACGAAGAAAGCTCACACAAGCTCAAATGCCATGCCGAAGTGGTCCCAAAGATTCTGTGGCCAACGGCAGCGAGGATCAAACAGAACGATTGAAAGACCAACTTGAGGAATTGGAAGAAGTCTTGTCTGAAGAAAGAATTCTGAGAAAGGGAAATATCTCTGTTGGCAGGTGGAACAATGAGCGACGACTTGTCGAAATTTCAGTGGCAAAAGGTGTGCATTGGAATGTGTTTGGAAAATCTGTTCAAGGGCATTTGGTCTTAGAACCAGAAGAAGCATTGTACATGCTTGACCATGGTATGCTCGAATTATACCACAACGATTTACCAGTTTCGCTCCAAGAGGCTTACCAATTGTTGCTGTCTGATCAATTCCCACTTCACCATTATTCTGTTTACAGTCATCTACGAAATCTTGGTTTCATAGTCTTACGATATAAAAGACCAAGCAAGAAAGTCTCGGAAATTAGAGAGGAGAAGACGGAAGGTGAATCTGTAGGAAAATTGGTAGAAATGGATCACGAAACGACAATAAAAAAAGTGGAAACTGTTGGGGAAGAAACATTGGAAGGACTGGAGGGAGGGAAGATGGCAAGTGAAGTAAAAAAGATAGAGGAACAGCAGACTGAACTCACTGAAGGCAAAAATAAAATGGTtgtcaatgaaaataatcCGGTGCTACATTATTGGAAGGATGAAGAATGTCGACCTTTAGTTCACCCTAGTGATGCAACATCATTAGaaaatattttgagcaAACTTCAAGTTATCAAGGGACGAACGAGGCAAGAAGCATCTCAAAATGCCAGCACGCcaagcaaatttgaaataactTACGACGTATTTCAACCTCAAAAGAATTTTCGTAAAACTGATCCTGGATTGCCAAATCATTCCATTTGTATTTGCAAGTTTTCAGACACCCCTCCTACGTTAGGGGAGATGAATTTCATAGCCTCTCAGTCGTACCCAGTGCCCCTAAAATATGCGGTCGTCAATGGTAGAGACGTGTCATTTTATTCCATATTGGATGTTCAACTACCAACTTACGTTGAAAGGTGACAGATTTCATGGTAAGGTCTGCATACCAGATTATAATCTTTGTATTCAAAGCAATCAATTCTATGTTATTTTATATACATCCTAAACAGTCACACTAAAAATAATTGTCATTAACATCCTATGAATTTAGTTCTTTTCATGCAGGAACCATTTCTGGCTCCTTTTTTGTCACCCTAGCTCTTCCTTCGCCTGGTTCGTCTGTCGGTGCTTCCGGTAAATTGATGTCCTCTTCCGGTTCTTTTGCTGGTACAGAAGGCAGTTCCATGTCCTAAAGAATTATTAAACATGAGACTTTTGCTCTTTGCCAAGGAAGGCGTGAATATGGTCTGGTTGACCATGGGCTGGTCATGTTATACTTCACCTTTGTGATCTCTTCGAGTTCTTTGAGAGCTGCGTCCTCATCTTCTTGACTAAGATTGGTTGCTAGTAGCTCATCAATTTCCTAGAGAAAAgaacagaaatgtttttgaaggAAAGTAATTCAAGGCCTTGTGAGTGGTTGAATTTTTCATTATCAATATTTGTAACATTAGGCTTGGTCATTTATGTATTTACTTACTCTTTGATACTCGATTCCTTCTTGTGTTTCTTCCATGATTTTCTCAACATCTTCAATCGACATAAGCTAGAAAATTCAGTGAGTGATTAAGCCATATGTCCACAATCCAAAAATATCATGGATCATTATGTAATTTTGTCATAGTGTAGTTTGGAAAAACTTTACAAATGGGCACAGAATACCTTGTGCATCTTGTCAAGGCATTCATTGCCAACTTTCAATCCTTCAACAACTTTAGATTGGACTTCAGCAAATTCTATGTCTTGGACCTATAATAAAGATCATAACTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z6J9	tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens OX=9606 GN=TSEN54 PE=1 SV=3
Q8C2A2	tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus OX=10090 GN=Tsen54 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005149 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12928 all species →	tRNA_int_end_N2	tRNA-splicing endonuclease subunit sen54 N-term	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024336 all species →	Domain	tRNA-splicing endonuclease, subunit Sen54, N-terminal	Interproscan
IPR036740 all species →	Homologous_superfamily	tRNA intron endonuclease, N-terminal domain superfamily	Interproscan
IPR024337 all species →	Family	tRNA-splicing endonuclease, subunit Sen54	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21027 all species →	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000213 all species →	Molecular Function	tRNA-intron endonuclease activity	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0000214 all species →	Cellular Component	tRNA-intron endonuclease complex	Interproscan
GO:0000379 all species →	Biological Process	tRNA-type intron splice site recognition and cleavage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15326	TSEN54; tRNA-splicing endonuclease subunit Sen54	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.