Gene detail

Detailed information of ENSAPQP00000015414.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3985320.1, transcription activator BRG1-like isoform X1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000017028

aaatgatcaactacgcatgctcggcaagtttaaatgtagtcgtcatcaggtcgtcatccaatcagatgcacgcatcaagtaactttcccgagcatgcgcacaaaaaaagtGAGTACAACAGTTggacctctgcatgtaattactctgtgacGAGTGCCCGCgccatttttgaaatgttgtatttCACAACGCTTGCACTCGTGTGCAAATACTTCGAGAAAACGatatgttttttaaataaattctCAAGATACTGACAGAATTTTTATAAAGATGGATGTAAACACACAAAAAATTCCAGACACGAAAGAATTTGAACGCTGTCAAGAATACTGTGAGGGCAATATCGCGATGTTTTATTGCCCTCAGTGTTTAACAAACTACTGCGCGGATTGCTACGAGAAAGAACACAAATTAAAACGCAGAAAAGAAAATCATGAAAAGATTTCCACACCTCGTAAAGTATGTCGAGAACACCATTTAACACTTGAATACCAAAACAAATCACGATACatgtgttgtatgtgtgttaaAGAACTTCCTCCAGGAGAACTGGCTAGAAATATTATTGAACCAATAGATGGTATTGCCACAGTTCTGAAGGAGAAGCTAGAGGACAGAATCAGAGAATTGGAATTAGTTTCACAAGCAATCCACAAGAGGATTGAAACAAGTAACGAAAGCATTAGTTCTGCAGTAGAATGCGCAAGGTCAGAAGTGCGAAGGTTTTTTACTGCCCTTAACTTGCTTTTGAATAAACAAGAGGAATCGTTTCAGCATCAGCTTACGTCATTATTACATACAACATCATCGAAACCTATTTTTAATGATATGAAAGAAACGTTGGAAGCTGTTGAAGAGCTGGTCAGAAAAGGTAAAGCATTATTATGTGAAGACAATCTGGTTGTTGCAAAAAAATTTGACcatgtttcaaaaataattgatGCATTACTTgacaatgaaaaaatcaagaaatttcCATTGCCTACATTGAATGTGTCCATCAATGTCCACCGACATCTTCTTGAAATGGTTAGACATCCCGGATATATTTCAACAACGTTTGATGAATGTAAAGGTTCAGGAAatgttttgtataaaaatcACCAAAAAGCGAACAAACGTGAAGAGGATTTAGAGAAGAGTTTCGACACAGTGGAAAGTAAAGATGGTCGAGAAACATTTCCCACTCCACCACAAGTTACAATATGTTCACCACCAATAAGTGTTgcagaagatgatgaagatgattcATATTCACTCATGCCTCAATTTTCCCAAAACTCCACTCCATTGTTTTGCAGCCCTGAAGAGGACTCGACATTACGACCGCTCGCTGTGAATAATGTGAATGACCAAGACATGAATGATGAGAACACTCGAAGCTCGCTGTGTTCGTGTAACTCTGAAGAATCATCTAattcaaatgaaaaacaagaacAAACAAATGACACTAATAGTGAACACCAGAAATCAGAACGAAAGCACGATTCGCTAGATATTTCtaaagaaaataaagataTTAAGAGGAAACTTGGCGAAAAGAACTTCTTCCTACCTAGAAAATCAAGACGTACGGAGGCATCTAAGGAATTGAGTTTATGTGACAAGTTACTAACAGAACTCTGGGTCTCCGACGATTCATTTCCTTTTGCCAGACCTGTGGACCCTAAAAAGGTCCCTGAATATTACGAAGTAATAAAGAATCCAATTGATTTGACGACAGTCAAAACGAAATTGCAAACTATCAACTATGATTCAGTGTACGATTTTGTTGTTGACATGAAATTGTTATTTGACAACTGTTATCAATTTAACCCGcgcgattcttcaatatttttgaGCGGTGTAAAGCTAGAGAAACAATTTATGGCATTGATGCGAGTGAGTTTTCCCTCACTCGATTATCAATCATCAATACCTGAAAATAATGTGGACCAGGCCACGACCGCTTAACATGTGTGTACAAAGCTTTTAAATTATCCCGAATTTTCTACTTTTGtggaattaaaataaaatatttggcaATTATATTACACTTTGAAATGAAGGAGTGTGTTGTGCTTGGGTTCTCTGTGTCTATATTCATTGTGCTAGCTGCGAGATTGGTTGTCGACTGTTTAACATGTCAAATGTTGCTGCATCCTTTGGTTAACAGTCTATGGATGTGTCCACGGCGCACCATTTCCATGCTACCTTAGACCACCTTACAACAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15164	Transcription intermediary factor 1-alpha OS=Homo sapiens OX=9606 GN=TRIM24 PE=1 SV=3
Q64127	Transcription intermediary factor 1-alpha OS=Mus musculus OX=10090 GN=Trim24 PE=1 SV=1
Q9NRL2	Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens OX=9606 GN=BAZ1A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007915 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45915 all species →	TRANSCRIPTION INTERMEDIARY FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08881	TRIM24, TIF1A; tripartite motif-containing protein 24	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.