Gene detail

Detailed information of ENSAPQP00000016187.1 in Leptogorgia sarmentosa

Genomic Location: chr17:6334676...6339420
NR annotation: XP_028395483.1, aconitate hydratase, mitochondrial-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSAPQT00000017849

ATGTACAAAATTAATGTTTCAAAGCCTCATCTTTCGatctattttcaaaaattgagtATGATTTTTCCCATTTCCCAGGTTGCAATGAGCAGACTGGAGCCAGAGACAGACTTAAATCGCAACTACCAAGTACTCGATGAAAATCTCACGGTTGTTCGAGAAAGGTTGAATCGTCCCTTGACTCTGTCTGAGAAAATTCTGTACAGTCACTTGGATGAACCTAAAACCCAGGACATTGAGCGAGGTGTGTCATATCTGAGATTGAGACCAGACAGGGTTGCCATGCAAGATGCAACTGCCCAAATGGCTGTACTACAGTTCATATCAAGTGGTTTGCCCAAGGTGGCAGTACCATCCACCATCCACTGTGACCATCTTATTGAAGCACAGGTAGGAGCGAGCCAAGATCTTGCCAAAGCCAAAGACATCAACCGTGAGGTGTACGACTTCTTGGGCTCAGCTTCAGCCAAGTATGGCATTGGATTTTGGAAGCCTGGTAGCGGCATCATCCATCAAATTATCCTTGAAAACTATGCCTTTCCTGGGGCCTTGTTAATCGGTACTGACAGTCACACGCCCAATGGAGGTGGTCTTGGTGGTTTATGCATTGGTGTTGGTGGTGCTGATGCAGTTGACGTTATGGCTGACATTCCCTGGGAATTGAAATGTCCAAAGGTGATCGGTGTGAAACTTACTGGGAAATTAAGCGGTTGGACGTCGCCTAAAGatgTGATTTTGAAAGTGGCAGATATTCTTACAGTGAAAGGCGGTACTGGTGCAATTGTTGAGTACCATGGTCCTGGTGTTGACTCCATCTCATGCACAGGAATGGGAACGATCTGCAACATGGGGGCAGAGATCGGAGCAACGACATCTGTGTTTCCCTTCAACTCACGCATGGCTGACTATCTCAAGGCTACAGGTCGGGAAGACATCAGTGGCTTGGCCCAGAAGTACATCCATATACTGGAGGCTGATGCAGGCTGTGAATATGACGAAGtgattgaaattaatttagaTGAGCTTGAGCCGCATGTCAACGGTCCTTTTACACCAGATTTGGGCACCCCCATCTCCAAATTGAGTGAAGTTGCTGAAAAGAATGGCTGGCCTTTGGAAGTCAAAGTAGCATTGATTGGCAGCTGTACTAATAGCAGCTATGAAGACATGACAAGGTCAGCAAGTATTGCAAAACAAGCTTTGGATCATGGTGTTAAAGCAAAATCGTTATTCACTGTCACTCCAGGTTCAGAACAGATCAGAGCAACCATTGAACGGGATGCAGTGGCAGAAACGTTGAGAGAGTTTGGAGGAACAGTGTTAGCCAACGCGTGCGGACCTTGTATTGGTCAGTGGAACAGACAGGACATCAAGAAAGGTGATAAGAACACCATTGTTACCTCGTACAATCGGAACTTCACTGGACGAAACGATGCTAACCCTGAAACGCACGCATTCGTTGCTTCACCAGAGATCGTGACTGCTCTTGCTTTGGGTGGCAGCTTGAAGTTTAATCCAATGACAGATCATTTGGAAGGAGCCAATGgaGAGAAATTTCAGCTTGAGAATCCCGCTGGAGACGAACTTCCATCTCGTggatttgacCCAGGTGAGGACACATACCAGGATCCACCATCCGACGGCTCTGGGGTGAAGGTTGATGTTGACCCAAGCAGCAATCGCTTGCAATTGTTGGAACCATTCGACGCATGGGATGGCAACGACCTTGTGGATTTACCTATCTTGATCAAGATTACTGGCAAGTGTACGACAGATCACATAAGTGCCGCTGGCCCTTGGTTGAAATACCGTGGACACTTGGATAACATCTCAAATAATATGTTCATTGCAGCTGTGAATGAAGAAAATGGAGAAGCTAATAATGTTCGCAGTCAGCTGAGCGGCGAATACGGTGCTGTACCTGACACAGCGAGACATTACAAGGCGAATGGCGTGAACTGGGTCGTGATTGGTGATGAGAACTATGGTGAAGGCAGCAGTCGAGAACATGCTGCCCTGGAACCCAGACATCTTGGTGGTAGAGCGGTCATTGTCAGGAGTTTTGCTCGAATTCACGAAACCAACCTTAAAAAGCAAGGCATGTTGCCTTTCACATTTAGCGACCCAAGTGATTACGATAAAATCCAACCGACAGACCGTATTTCTCTCCTTGGTCTGAAAGAATTTGCCCCTGGAAAGCCAATAACCTGTGAAGTAACCCACCAGGATGGTAGTAAAGAGCAATTCGCACTTAACCACACATTTAACGAGACCCAAATTGAATGGTTTAAGGCTGGTAGTGCGCTCAATAACATGGCAAAATAA

Transcript

ENSAPQT00000017849

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99KI0	Aconitate hydratase, mitochondrial OS=Mus musculus OX=10090 GN=Aco2 PE=1 SV=1
Q9ER34	Aconitate hydratase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Aco2 PE=1 SV=2
P20004	Aconitate hydratase, mitochondrial OS=Bos taurus OX=9913 GN=ACO2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004434 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00694 all species →	Aconitase_C	Aconitase C-terminal domain	Domain	Interproscan
PF00330 all species →	Aconitase	Aconitase family (aconitate hydratase)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015931 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	Interproscan
IPR001030 all species →	Domain	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain	Interproscan
IPR015928 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase, swivel	Interproscan
IPR015932 all species →	Homologous_superfamily	Aconitase, domain 2	Interproscan
IPR050926 all species →	Family	Aconitase/IPM Isomerase	Interproscan
IPR018136 all species →	Binding_site	Aconitase family, 4Fe-4S cluster binding site	Interproscan
IPR000573 all species →	Domain	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain	Interproscan
IPR036008 all species →	Homologous_superfamily	Aconitase, iron-sulfur domain	Interproscan
IPR006248 all species →	Family	Aconitase, mitochondrial-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43160 all species →	ACONITATE HYDRATASE B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003994 all species →	Molecular Function	aconitate hydratase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01681	ACO, acnA; aconitate hydratase	EC:4.2.1.3	Carbon fixation pathways in prokaryotes	ko00720	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.