Gene detail

Detailed information of ENSAPQP00000017311.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4002163.1, WD repeat [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000019044

ATGTTCTCTGCCGATGTCATCAACGAAAACCCAGATTCAATCTGTCCTCAACTCCTAGgcaGACTGCTATCTTATGAAGAGTTTCCGGGGATAAAGACGCTATTAGAGCAACTCCGTGCAACATGCACGGAGACTTGTCGTCTTATACCGGAATTCTCATGTTTAGATCTTGGCGGCCCTGAgatctttcgaaaaacgtttgattcaAGGGTATGCTCATTAGCGACGTCCAATATTTCATCCGCTACTCTTGTCCTTTGTGGTTTAGAGAATGgttcaatcacaatctttgatCTTGACACAGGTAGAGAAGTTCAACAACTACTGGGACATTCTAAGAAAGTTAGCTGTTTGgctgtgtcacaaagtggaacaatACTGGCGTCAGGGTCGTGGGATCGAAGTACAATACTTTGGAGAATGGACAGttatgaacagctttttgtgttccaaGGGGAGAGTGAAGTTAATGCTCTGGATTTCATTGcagatgatcagcgagtgtttattggaacagacgatgggctgaaagtgtattgtgtatctaccggagaaaacctctcaacaagtattcctgagGGAGTCACGtcgctgtgtacgaccaaagatggacagttcattgctactgttggTCGTGTTGGATTATTTCCTGACaagactatcaagttgtggaaagccgatacactaaattttgaggccagtttggttggccataCACATGCGGTGACATgtgttgtcgcaacagattcaggaaaaaacaatccaatgctTGTATCTGGTTCAAACGAtggaacaataaaaatttgggatttaaaaacgtaTCAGGAAATTCGTACCCTTGACGTTTTTCAATCTGGTGTTGCCTGTATTGCTGTGAGCGATGATAAAAAGAATATTATCTCTGGAGACATTAAAGGAAGTGTTAGGTTGTGGTGTTTCCACACTGGAAAGTCACTTTCCTGTTATGAAGGTCATACCGAGTACATCAGCGGTGTTGCAATAATTCCCAATGCAAAGAAGGCATTGACAGCGTCAGGGGATGGAAGTATCAGGGTTTGGAACCTGGGAACTGCTGCGTACATGGAAGAAAACAGTCTCTATGATCAttcaaatgacgtcacagatatTACAGTCGCTCGTGATGAGTCTGGATGTGTTTGCGCATCCAAAGATGgaactttcaaagtttggaatcttcacacacagtgcttttctgtcacaggtgaccttgaatgggcaaaacatgttgcagtctctgCTGATGATCGCTATGTCGTGTCGCTGTCAAAGGATGCGGACTTCTCAAGGAAGTCCTCGATAAAGGTTTGGAATTTGTCCGATGGCAGTGTGATCAGTGGAATTGATAGCGATGGCAAACCTgagattgttcgctttagttctgatgggttgcaagttataattggatgcaAAGATAACCATGTCTTCATCTGGGACTGGCAAAAGCCGTCTTTGAAAGACGTCATTTTACCCGCGTCGTATACAGTGGAAATAGCATGCGATCGCaacatgatttacacatgcagccctgatatgcatatttgtgaaatcaatctcgacTCTTTGCAAGTATCGACTGTACGTTCGAGGGTCGCACCTGTAATATCACCCGACGGCAAAGATATTTTGTTTGGCTCGCTTCAGAAAAATGTGTTTCTCCAGTGGAAACTTTTAACTGATAGTTGGATCGACCATAATGCAGGTCACCCTGACgactcgatagttacagcaattgacatcacatcaaatgggaaatttgctttGTCTGGAAGCAGTTCGGGAACATTGTCGCTGGTCGACATAGAGTGTTCTAAAAATGTTCGATTCGCAAAGACCGAATCTGGAGGCGCCATACGTTTTGTCTGCTTATTAAGTGATGATgtccgtttcgtttttgttaACGAGGTAAACAGGATCGAACTAAGAACTCTTAATGATATCGAGACCAGCATTAATTTGAGTCAACCAGATGTTAAAGTAACTTGCATTACTGCTCTTGGGTCACAAtatgcattgcttggttgtgatgacggAGAACTGTTATGCTTCCATGTTAACAATaaatcgcagttgaaattcctAGCACACaaggatgccatttctcaagttaaagGCGAGCTAGGAGGTCATGATCTTTCACGTCGCTTTGCATCGGGGTCCATCGgtgggtctgtgaagctttggaatgttgaagaaaacttgccGACGTTAATATGGTCACATGACAACATTTGTTCGGATCCCATTATCGCGTTAGAATTCGTGCCCTGCTCGGATGATATCATAGTTGCTTCTGGCAAAAAgATTGATCGGATAAATGCCACCGGAGTCGTGCATAGTTACGAATACGAATATATGTTGATGTTGGGGTACATGGAGAGAATTAAAACAATGCGCGTGGTCCAGAACTCCCTTGTTTGTTTTCATCTGTTCAAATATTATGATGGTACAGCTGAAGAGAGAATCGCAAAGTGGAACTTGAACGGCACCAAGGAAGAGTACAGCAGTTCTTTCCCCACTGAGAAAGTTTTAAGGATTAACAATTCTGGCAACCTTGTGGCTATATTAGGTCGTGGTTCTTTGGTGATTGAGAACTTCTTAACTGGAAAGGTTCTCCACAGATTTCCAATTGAAGATGCTGAATGGATCAGAGCGTTAGCATTAGCGCCTGGAGGTGAATCACTTTTGTCGTGCTCGGATATTTATGATAAGAAGacgctgaaactgtggaacctaccaaatggagagtgtgttgaagagtttcatttcgaccAGGATGTTTTAGCTATCGCATGTGgctcaaatggaatggtttgtgttggcctggcaggaggtcgggtctgcttccttcgtcttaataagttatcctcgcattaa

Transcript

ENSAPQT00000019044

GTCAGCGTATTCTCTgtaatatcagattttcgttttgtggACACAGAATCGGAGGAAATCCAACTTCTCAAATCCTCGTTAATGTTCTCTGCCGATGTCATCAACGAAAACCCAGATTCAATCTGTCCTCAACTCCTAGgcaGACTGCTATCTTATGAAGAGTTTCCGGGGATAAAGACGCTATTAGAGCAACTCCGTGCAACATGCACGGAGACTTGTCGTCTTATACCGGAATTCTCATGTTTAGATCTTGGCGGCCCTGAgatctttcgaaaaacgtttgattcaAGGGTATGCTCATTAGCGACGTCCAATATTTCATCCGCTACTCTTGTCCTTTGTGGTTTAGAGAATGgttcaatcacaatctttgatCTTGACACAGGTAGAGAAGTTCAACAACTACTGGGACATTCTAAGAAAGTTAGCTGTTTGgctgtgtcacaaagtggaacaatACTGGCGTCAGGGTCGTGGGATCGAAGTACAATACTTTGGAGAATGGACAGttatgaacagctttttgtgttccaaGGGGAGAGTGAAGTTAATGCTCTGGATTTCATTGcagatgatcagcgagtgtttattggaacagacgatgggctgaaagtgtattgtgtatctaccggagaaaacctctcaacaagtattcctgagGGAGTCACGtcgctgtgtacgaccaaagatggacagttcattgctactgttggTCGTGTTGGATTATTTCCTGACaagactatcaagttgtggaaagccgatacactaaattttgaggccagtttggttggccataCACATGCGGTGACATgtgttgtcgcaacagattcaggaaaaaacaatccaatgctTGTATCTGGTTCAAACGAtggaacaataaaaatttgggatttaaaaacgtaTCAGGAAATTCGTACCCTTGACGTTTTTCAATCTGGTGTTGCCTGTATTGCTGTGAGCGATGATAAAAAGAATATTATCTCTGGAGACATTAAAGGAAGTGTTAGGTTGTGGTGTTTCCACACTGGAAAGTCACTTTCCTGTTATGAAGGTCATACCGAGTACATCAGCGGTGTTGCAATAATTCCCAATGCAAAGAAGGCATTGACAGCGTCAGGGGATGGAAGTATCAGGGTTTGGAACCTGGGAACTGCTGCGTACATGGAAGAAAACAGTCTCTATGATCAttcaaatgacgtcacagatatTACAGTCGCTCGTGATGAGTCTGGATGTGTTTGCGCATCCAAAGATGgaactttcaaagtttggaatcttcacacacagtgcttttctgtcacaggtgaccttgaatgggcaaaacatgttgcagtctctgCTGATGATCGCTATGTCGTGTCGCTGTCAAAGGATGCGGACTTCTCAAGGAAGTCCTCGATAAAGGTTTGGAATTTGTCCGATGGCAGTGTGATCAGTGGAATTGATAGCGATGGCAAACCTgagattgttcgctttagttctgatgggttgcaagttataattggatgcaAAGATAACCATGTCTTCATCTGGGACTGGCAAAAGCCGTCTTTGAAAGACGTCATTTTACCCGCGTCGTATACAGTGGAAATAGCATGCGATCGCaacatgatttacacatgcagccctgatatgcatatttgtgaaatcaatctcgacTCTTTGCAAGTATCGACTGTACGTTCGAGGGTCGCACCTGTAATATCACCCGACGGCAAAGATATTTTGTTTGGCTCGCTTCAGAAAAATGTGTTTCTCCAGTGGAAACTTTTAACTGATAGTTGGATCGACCATAATGCAGGTCACCCTGACgactcgatagttacagcaattgacatcacatcaaatgggaaatttgctttGTCTGGAAGCAGTTCGGGAACATTGTCGCTGGTCGACATAGAGTGTTCTAAAAATGTTCGATTCGCAAAGACCGAATCTGGAGGCGCCATACGTTTTGTCTGCTTATTAAGTGATGATgtccgtttcgtttttgttaACGAGGTAAACAGGATCGAACTAAGAACTCTTAATGATATCGAGACCAGCATTAATTTGAGTCAACCAGATGTTAAAGTAACTTGCATTACTGCTCTTGGGTCACAAtatgcattgcttggttgtgatgacggAGAACTGTTATGCTTCCATGTTAACAATaaatcgcagttgaaattcctAGCACACaaggatgccatttctcaagttaaagGCGAGCTAGGAGGTCATGATCTTTCACGTCGCTTTGCATCGGGGTCCATCGgtgggtctgtgaagctttggaatgttgaagaaaacttgccGACGTTAATATGGTCACATGACAACATTTGTTCGGATCCCATTATCGCGTTAGAATTCGTGCCCTGCTCGGATGATATCATAGTTGCTTCTGGCAAAAAgATTGATCGGATAAATGCCACCGGAGTCGTGCATAGTTACGAATACGAATATATGTTGATGTTGGGGTACATGGAGAGAATTAAAACAATGCGCGTGGTCCAGAACTCCCTTGTTTGTTTTCATCTGTTCAAATATTATGATGGTACAGCTGAAGAGAGAATCGCAAAGTGGAACTTGAACGGCACCAAGGAAGAGTACAGCAGTTCTTTCCCCACTGAGAAAGTTTTAAGGATTAACAATTCTGGCAACCTTGTGGCTATATTAGGTCGTGGTTCTTTGGTGATTGAGAACTTCTTAACTGGAAAGGTTCTCCACAGATTTCCAATTGAAGATGCTGAATGGATCAGAGCGTTAGCATTAGCGCCTGGAGGTGAATCACTTTTGTCGTGCTCGGATATTTATGATAAGAAGacgctgaaactgtggaacctaccaaatggagagtgtgttgaagagtttcatttcgaccAGGATGTTTTAGCTATCGCATGTGgctcaaatggaatggtttgtgttggcctggcaggaggtcgggtctgcttccttcgtcttaataagttatcctcgcattaaaaaaaactccaaccaaaaggttgaagacttaagagaaattgcaacattgtctgaaatgaatattaaacgtGGAAACAAGGATATGTGGGGtaacaatatcaatatttctt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9M3B4	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1
F4I9T0	BEACH domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=BCHB PE=4 SV=1
Q68EI0	WD repeat-containing protein 18 OS=Danio rerio OX=7955 GN=wdr18 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010175 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19848 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24737	WDR6; WD repeat-containing protein 6	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.