Gene detail

Detailed information of ENSAPQP00000017403.1 in Leptogorgia sarmentosa

Genomic Location: :...
NR annotation: CAB3988720.1, very low-density lipo receptor-like isoform X2 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSAPQT00000019137

CCCCCACGTGCGATCCCTCTTCACAATTCACTTGTGGTGACGGTGAATGTTTCcctatttcttttcattgcgACGGCGAAAATGACTGCCTTGACTCCTCGGACGAACAGGGTTGCCCCCCACCGCCCACTTTCGCTCCTTGTCCAGCTCACAAATTCGGATGCAGTGACGGAGAATGTATACCGCTGGACTGGAAGTGCGATGGTGCACCAGACTGCAACGATGGAACAGACGAATTGAGCTGTCCTACAACGTGCATGAGCATGCAGTTTACATGCGCGCAATCGGGGAAGTGCATTTCCCAGCATTCAAGGTGCGACGGTATTGAAGATTGTGGAGACGGTTCGGATGAAGCGAAATGTGAACGCCCCATATCATGTAGTGATGCTAGTTCGTTTCGTTGTGGAAGTTCGCCATATTGTATCAACGCGACCAAAGTGTGCAATGGTTTGAGAGATTGTCCCCGTGGGGAAGATGAAGCACCTAACTGTGGAATCGACGAGTGTTCTGATCATAATGGTCACTGTATTCACAAATGTAAAGATCTTCCTATTGGTTACGAATGCCATTGTAATAAAGGCTACAAACTGGCCAACGACAGCAGATCATGTGAAGACCTAAACGAATGCGAAGAGGTGTATGGCTCCTGCAGTCAGACGTGTGTTAACTTCAAAGGACACTTCAAATGTAGTTGTGTTCAGGGTTATCGTAAGGAAGAGGATGTCACGTGTCGAGCCACAGGCCCACAAGCGTATCTTGTCTTTGGTGGCGAACATGCCATTCACAATCTCACAATATCCGGGATTCACTACGGTGATGTTGTTTTAAATCGCAACGCACCAATTGCCATAGGCCATGATGTCAATAATGGTTACGTTTACTGGAGTGATATTATTGATGGGACGATTGAACGTGCACGATTATTGGGTGATGGAACTGCGGAGACAGTTGTTAAGAAAGTAGTACACTCAAATGGTCTGGCCATTGATTGGATtggaaagaaaatatattggaCCGATGAAACATTGAAATCGATTGAAGTTTCTGAATTGGATGGCAAGAATCGTTTAAAACTATTCAGTGTCAGCTTAGACGCGCCGCGCGGTATAGCTTTGGATCCATTTGAAAGGTATATATTCTGGACAGATTGGGGTGGAGTACATCCTAAAATTGAACGAGCAAGTATGGATGGCAATTTGACTTCTCGCAAAGTTATCCTTGACACTGACCTCGTCTGGCCAACTGCCTTGACTATAGATACCATCATTCAGAGGTTGTTCTTCGCGGACACAAAATCGCAGCGAATAGACACGATCAAATACGACGGTTCGGCGAGAAAGACTTTGATCTTCAAAGGACTTGTTCACCCGCTAGGTTTGGCAGTGTTTGAGGATCGTCTGTACTATACTGATTATTCGCTTGACACCATATTCACCGTCAACAAAAGAACTGGCCAACGATTAGGTGAACTGAAAAACAATTTGAGAAGTCCTACGGGTGTGAATGTTGTTCACCCATTGCATCAGAAACAAGTCCCCACACAGTGCGCCAGAAATAACGGTGGCTGCTCTCATCTCTGCCTGCTTTCAAGCGTTTCCGCAAAAAATCACACCTGCCGCTGTCCAAACGGAATGGTGTTGAGAAACGATGGCAAATCctgcgttcatagcgacgaaTCAAATTCAACGACACCTAGCAAAACCAGCCTTTCTCCAACGATCAGGATTGAATCTACTGGCAAACCTAGCCAGACCAGTCCATCCGGGACGACCAGAACGATTACAACAAGTTACAAAGATGGTACGCTGGGCAAGAAACACGGTGAATCATCTTCAAACAGCGGACCAATCATAGCTGGAGTTACTGTGGCTGTTGTGGTACTCATCTTCCTGCTCATTGTCGCTTTCTTGTATTGGCGAAGACAAAGCAAGATGGCGGATAGAAGAATTCTGTTTTACAAAGTTAACTCCACAACGCCGCCGCAAAACGACTTCTATGAAGAGCTTATCAAAAGCCACGAAAACATTGGCGGAATGTCACGCGTGCAATTTACATAATGTTGTATAGATAGCTGATAGGCAAATGCAAAAAACGTACGCTTGTGCATGTCTCCTGATCATGAAAGAGTGCCATAAATGATTTCATAACTCGCATGGTTTGTGAAGCTGTTTGTTAATTTGAGTTAAGGATTGTCGAGTAGCAGTAAAGAGAAAGACAAACGAAATTTATTCCTACAGGAAGTTGACTGTTGTTTCCTATCATTTGAAGAAAGAACTAGTGATCGGCTTAGTCCCCGGGGTGAAGCTGTGCAACGTCAGAAGGTAGTAGTGACACAAGCCATTCACTCATGTTTTCCTGGCTAACGACAGATATTGAAAGAGCCAATGAGCAGTCGAGTTTTATTTCGAAAAGTGTGTCCAGTAACAGGATAAAAGCATCCTGCATAGCTACAAGCAAAAtatcggcaaaatattgaaatatttcgtttATTTGTGGACTGTTCAAGCTGTATAttgtacaaatatacaatCATTATCGCGTAGTCGTTTTTttaaacggcaatttttgcacggcaacgggcatccagcatcgagacacggcaagttgaaagaaacttttcgtattttttcgactttatcactcgttttgttgcctgaaaacgttgtacatatttagtaatgcTATTCTAGAAGCAGGGGCTGCTGTTTTTTAGCGATGTTTTTTCGCAAGACattgattttttcgccttgttttaagcggtagcgagtcatattagtgtttacttgccaaccttatatccaggtgatctcgatacacggaaaaggacggggactagctgtcaaatagaaatcaaTTTTCCGACCGAAACGactgaatatctcccgtaatatactttatttcaattccatatttttgtcaaagctatagttctcataaccaaacataattacaaaatttcaactagttttgtacaaaataacgaaagatataatcgtgtgaatatagcaaaatggatttctattcggacaaccctttctgagcgctgattggctgaa

Protein

Uniprot

Uniprot term	Description
P35950	Low-density lipoprotein receptor OS=Cricetulus griseus OX=10029 GN=LDLR PE=3 SV=2
P35952	Low-density lipoprotein receptor OS=Rattus norvegicus OX=10116 GN=Ldlr PE=1 SV=1
P01131	Low-density lipoprotein receptor OS=Bos taurus OX=9913 GN=LDLR PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan