Gene detail

Detailed information of ENSAPQP00000017413.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028395357.1, RAD50-interacting protein 1-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000019146

atggcggcaaaATTGGATTTAGTTGCATGTGTGAACAACGagcaaaaaaatgttgttctgGAAGAGAAATTACAACGAAGATTATGCAGTTTTCTTGACGAACACTTTCCTGAGGACTTGTCCAATGTTAGGCAGTGTCTTGAACGAatggaaaaagaaagaaacgcATTAGAAAAACAGTTGGCAATATCCAAAAACAATAAGGATGTAGCACCATTGTGCGTTGGAAAGACAATTGAAGATGCTGGTTTAGCGTTAGAAAATGTTGATAAAATTCAGTGTAATTTAGAAGAACTGAACACTAATGTCGACGAACATAATGACAAAGTCAATACCATTATAAAACAGTTGGATGGTTTAAACAATACTGTGAAAGAACTAGAGAATTTAATTAGTTATATCAATTGGcttcaaaaagttgaagatCTAAGTGCGTTGATTTACCAAGACTTGGAAACAGGATCATTAAAGAAGGCTATATCAGAACTTTTGTTGATGAAAAATCTCGAGAAAGATCTACAGGAAACATCTTGTCGTCATTTAAAGAAGTTTATTGTTGACACTTTGAAACATTGGAATAAAATTGTTGTGGATAAACTTTCCAAGGAATTCGACGAAGTTCTCAAAGTCTTAAAATGGCCATTCACTTCTGGATCAACTGCCCCATCTTTGGCATCAAATTCAGACATGTTCCAAACATTAGAAAATCTCTTTTTGCTTctacttcatgtaaacaaGGCTCTTGAACCTGGTGATGGGGAACAAGTGGAGAATATATCCCTTCCAATGGAGTTATTATTACAACCATTACAAAAGAGATTCCAGTATCATTTTTATGGCAAACGACAGACAAATAACAAAGAGAAGCCTGAATGGTTCTACACACAAGTTCTCAACTGGTTACGCGATCATGAAGATTTCTTGGACTCCACAATTCAACCAATCATTGACAAGTCTGACTTCATTTGCAGATCTGCTCAGGTTCAGTTCACTGAAGGTATTCTTCAACTGGTTGTAGAAAAAATGAAGCAGAGCATCCCGTTAGTGGTTGAAGATGAAGCTTTGTTCTCCCATTTTGTCGATGAGACTTTGCTCTTTGATCAAGAATTGAGGATTAATTATGATCTCTCACAAGTGAAGAGCAATTGTCTTCAAATATTGGCTGAACAACCTTATTTTGGTAAATGGGTTGCattggaaaaaaaatAtgcaatggaaaatattcaatcATTGTTGTCTTCTGAGAAGGCCTGGTGTCCAAGATATGAAGATGCAGCTGATGTTGATGAACTTAAAGTCCCAGAGTGTGTTGAAACCTTTGTCTCTCTCTTGGTTGGCATCACAGaTCGCTACAAAAACTTGCCGGGTGAGCAAGATCGAATATCATTTGTGAATGTCCAACTTGATCTTCTGTATTTTTTCACGGCAAGCCTTGACGAAATAAAGAATGAAGAAGAACCTTTGGCTGCTTGCTCTCTCTTCATCATGAACAGTACAAACTACATTGCTACAATTTTACAAGATTGGTCAGAACAACCGTTCTTTCTGAAACTCTACTACACCAAAACACAACTTGCAATGAAGAAACATAGCGAAGCAAGTGAAATAACACCAGAAAGTGGTGGAGGTGGTATTCTCAATGCTGATCATTATGACATGAATGAAAGTGGGACATTATTTGAAGAAGCTATCAATCAGCTTCGCACACTACAGACTAATATGATTGCTGTGTTAGTGAGACATGTGGCAGCAGAGTTTAAAGCAAAGAGCGATTCATATAAAAAAGAAAGttgGCACAGTCTTCCTTCACAAAAAGACCTCGCGATAACCAGTCTTTCTTCATCTCTTTGTGACATGATAGTCTATCTGAGAGAGATACTGCGCAAGTTGAAACAAGAATTGGTCGACTCTCTATTCACCTGTTTTTGGAAACAACTTGCTGAGGAGTTGTCAGAATTCTTTTTTGAAGAGGTTGTGTTACAAAGTCATTTCAATGAAGGTGGAGCTGCCCAACTAAAGTTTGATATTCACAAAAACTTGTTTGTCTTGTTTGGTCAGTTCACAGCTAAACCTGAAAATTATTTCAGAAAATTAAAGGAGGCAATCATTTTATTGAATCTGATGCCAGGATCAGCAGTGCTCTTAAAGGAAACTGTCGAGGAAAAGAAACGCAAGCCAGATAAGGAAACAACATCTGATGCTTTGGAGGAACTCGCTGTTTATACATTGTCATCCAATGACGTACTGAATGTCTTAAACTCAAGAATTAACTGGACAAAATAA

Transcript

ENSAPQT00000019146

GCATCGCAAACACTCACCTTTCCTACTACCTTCTGTTCCCTTACGAAAATcttaataaaaacaataaaaagcGCAGAAAATCTTGATAAAAATAGAATGAATATTTAAAGCCCCTATTTTTAATCGATTGTGAAATATTCCCCCGtaatccttcgtaggaatttatagaattccttaattttccccaaagtaggtgaagtctgacaatagtttttatattgggaaaaatcGAAACaatgcagaattcctgattttaagGAAGAACCAAGCGGAATTCCCATAGTCTCCctcaatccaagatggcggcaaaATTGGATTTAGTTGCATGTGTGAACAACGagcaaaaaaatgttgttctgGAAGAGAAATTACAACGAAGATTATGCAGTTTTCTTGACGAACACTTTCCTGAGGACTTGTCCAATGTTAGGCAGTGTCTTGAACGAatggaaaaagaaagaaacgcATTAGAAAAACAGTTGGCAATATCCAAAAACAATAAGGATGTAGCACCATTGTGCGTTGGAAAGACAATTGAAGATGCTGGTTTAGCGTTAGAAAATGTTGATAAAATTCAGTGTAATTTAGAAGAACTGAACACTAATGTCGACGAACATAATGACAAAGTCAATACCATTATAAAACAGTTGGATGGTTTAAACAATACTGTGAAAGAACTAGAGAATTTAATTAGTTATATCAATTGGcttcaaaaagttgaagatCTAAGTGCGTTGATTTACCAAGACTTGGAAACAGGATCATTAAAGAAGGCTATATCAGAACTTTTGTTGATGAAAAATCTCGAGAAAGATCTACAGGAAACATCTTGTCGTCATTTAAAGAAGTTTATTGTTGACACTTTGAAACATTGGAATAAAATTGTTGTGGATAAACTTTCCAAGGAATTCGACGAAGTTCTCAAAGTCTTAAAATGGCCATTCACTTCTGGATCAACTGCCCCATCTTTGGCATCAAATTCAGACATGTTCCAAACATTAGAAAATCTCTTTTTGCTTctacttcatgtaaacaaGGCTCTTGAACCTGGTGATGGGGAACAAGTGGAGAATATATCCCTTCCAATGGAGTTATTATTACAACCATTACAAAAGAGATTCCAGTATCATTTTTATGGCAAACGACAGACAAATAACAAAGAGAAGCCTGAATGGTTCTACACACAAGTTCTCAACTGGTTACGCGATCATGAAGATTTCTTGGACTCCACAATTCAACCAATCATTGACAAGTCTGACTTCATTTGCAGATCTGCTCAGGTTCAGTTCACTGAAGGTATTCTTCAACTGGTTGTAGAAAAAATGAAGCAGAGCATCCCGTTAGTGGTTGAAGATGAAGCTTTGTTCTCCCATTTTGTCGATGAGACTTTGCTCTTTGATCAAGAATTGAGGATTAATTATGATCTCTCACAAGTGAAGAGCAATTGTCTTCAAATATTGGCTGAACAACCTTATTTTGGTAAATGGGTTGCattggaaaaaaaatAtgcaatggaaaatattcaatcATTGTTGTCTTCTGAGAAGGCCTGGTGTCCAAGATATGAAGATGCAGCTGATGTTGATGAACTTAAAGTCCCAGAGTGTGTTGAAACCTTTGTCTCTCTCTTGGTTGGCATCACAGaTCGCTACAAAAACTTGCCGGGTGAGCAAGATCGAATATCATTTGTGAATGTCCAACTTGATCTTCTGTATTTTTTCACGGCAAGCCTTGACGAAATAAAGAATGAAGAAGAACCTTTGGCTGCTTGCTCTCTCTTCATCATGAACAGTACAAACTACATTGCTACAATTTTACAAGATTGGTCAGAACAACCGTTCTTTCTGAAACTCTACTACACCAAAACACAACTTGCAATGAAGAAACATAGCGAAGCAAGTGAAATAACACCAGAAAGTGGTGGAGGTGGTATTCTCAATGCTGATCATTATGACATGAATGAAAGTGGGACATTATTTGAAGAAGCTATCAATCAGCTTCGCACACTACAGACTAATATGATTGCTGTGTTAGTGAGACATGTGGCAGCAGAGTTTAAAGCAAAGAGCGATTCATATAAAAAAGAAAGttgGCACAGTCTTCCTTCACAAAAAGACCTCGCGATAACCAGTCTTTCTTCATCTCTTTGTGACATGATAGTCTATCTGAGAGAGATACTGCGCAAGTTGAAACAAGAATTGGTCGACTCTCTATTCACCTGTTTTTGGAAACAACTTGCTGAGGAGTTGTCAGAATTCTTTTTTGAAGAGGTTGTGTTACAAAGTCATTTCAATGAAGGTGGAGCTGCCCAACTAAAGTTTGATATTCACAAAAACTTGTTTGTCTTGTTTGGTCAGTTCACAGCTAAACCTGAAAATTATTTCAGAAAATTAAAGGAGGCAATCATTTTATTGAATCTGATGCCAGGATCAGCAGTGCTCTTAAAGGAAACTGTCGAGGAAAAGAAACGCAAGCCAGATAAGGAAACAACATCTGATGCTTTGGAGGAACTCGCTGTTTATACATTGTCATCCAATGACGTACTGAATGTCTTAAACTCAAGAATTAACTGGACAAAATAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BZ36	RAD50-interacting protein 1 OS=Mus musculus OX=10090 GN=Rint1 PE=1 SV=2
Q6NUQ1	RAD50-interacting protein 1 OS=Homo sapiens OX=9606 GN=RINT1 PE=1 SV=1
Q9VS46	RINT1-like protein OS=Drosophila melanogaster OX=7227 GN=Rint1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004939 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04437 all species →	RINT1_TIP1	RINT-1/TIP-1 family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007528 all species →	Family	RINT-1/Tip20	Interproscan
IPR042044 all species →	Homologous_superfamily	EXOC6/PINT-1/Sec15/Tip20, C-terminal, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13520 all species →	RAD50-INTERACTING PROTEIN 1 RINT-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0070939 all species →	Cellular Component	Dsl1/NZR complex	Interproscan
GO:0060628 all species →	Biological Process	regulation of ER to Golgi vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20474	RINT1, TIP20; RAD50-interacting protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.