Gene detail

Detailed information of ENSAPQP00000018737.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4002163.1, WD repeat [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000020610

ATGTTTCTATATTTGGCTATATTTCCAGAGGATACAGATATACCGTCAGATGTACTCGAGCTGCTGTGGTGTTCGATACAGAACCAGAGTGGAAAAACTTCGCGCAAACATCAGAAAGATATACTTGCTGTGCTCGAGAGAAAGTCGCTGATCTTaaaagGGCCTGAACTCCACGGAAAGAGAAGCTATCGTGTACACGACTTGCTTTTGGATTTTGCCCAGACAAAACTTCAAGACATGGGTACACTAAATGATGTTCAGGATAAGTTCGTGAAGACACTTCGTGGCCTGTGCGTGGATGGTGAATGGAATGATAATTCAACTACCTGCCAAAGAGACTATTATTTCAGGTACCTACCCtatcacatttattcttcGGGACGACATGGTGAACTACTTCAGCTGCTGTTTGATCTACACTGGCTcaaacaaaaagtgaagcaCGTCAACGTATTCTCTgtaatatcagattttcgttttgtggACACAGAATCGAAGGAAATCCAACTTCTCAAATCCTCGTTAATGTACTCTGCCGAAGTCATCAATGAAAAGCCAGATTCAATCTGTCCCCAACTCCTAGgcaGACTGCTATCTTATGAAGAGTATCCGGGGATAAAGACGCTATTAGAGCAACTCCGTGCAACATGCACGGAGACTTGCCGTCTTATACCGGAATTCTCATGTTTTGATCTTGGCGGCCCTGAgatctttcgaaaaacgtttgattTCATGGTATGCTCATTAGCGACGTCCAATTCTGCATCCGCTACTCTTGTCATTTCTGGTTTAAGGAATGgttcaatcacaatctttgatCTTGACACAGggaGAGAAGTTCAACAACTACAGGGACATTCTGAGGAAGTTAGCTGTTTGgctgtgtcacaaagtggaacaatACTAGCGTCGGGGTCGTGGGACCGAAGTACAATCCTTTGGAGAATGGACAGTTATAaacagctttttgtgttccaaGGGGAGAGCAGAGTTAATGCTCtggatttcagtgcagatgatcagcgagtgtttattggaacagacgatgggctgaaagtgtattgcgtatctaccggagaaaacctctcaGCAAGTATTCCTGAGAGAGTCGAGtcgctgtgtacgaccaaagatggacagttcattgctactgttggaGATGGAGACGagactatcaagttgtggaaagccgatacactaaatttCCAGGTcagtttggttggccataCAGATGAGGTGACATgtgttgtcgcaacagattcaggaaaaaacaatccaatgctTGTGTCTGCTTCAGACGAtgagacaataaaaatttgggatttaaaaacgtaTCAGGAAATTCGTACCCTTGACGTTCAATGTTATGTTACTTGTATTGCTGTGAGCGATGATAAAAAGAATATTATCTCTGGAGACGCTGGAGAAAGTGTGAGGTTGAGGTGTTTCCACACTGGAAAGTCCCTTTCCTGTTATGAAGGTCATACCGATTACATCAGcggTATTGCAATAATTCCCAATGCAAAGAAGGCATTGACAGCGTCATGGGATGGAAGTATCAGGGTTTGGAACCTGAGAACTGCTGCGTACATGAAACAAAACAGTCTCTCTGATCATTCAAATAACGTCACAGATATTAAAATCGCTCGTGATGAGTCTAGATGTGTTTGCGCATCTACAGATGgaactttcaaagtttggaatctcCACACACATGCACAGTGCTTTTCTGTCAcaggtgaccttgaatgggcaaaacatgttgcagtctctgCTGATGATCGCTATGTCGTGTCGCTGTCAAAGGATGGGCGGAATATCTCATTCTCAAGGAAGTCCTCGATAAAGgtgtggaatttgtcCGATGGCAGTGTGATCAAAGGAATTGATAGCGATGGCACACCTgagattgttcgctttagttctgatgggttgcaagttataattggatgcaAAGATAACCATGTGTTCATCTGGGACTGGCAAAAGCCTGATGCTTCTTTGAAAGACGTCATTTTACCCGCGTCCTATACAATGGAAATAGCATGTGATCGCaacatgatttacacatgcagccctgatatgcatatttgtgaaatcaatctcgacTCACTACAAGTATCGACTGTACGTCCGTGGGTCGCACCTGTAATATCACCCGACGGCAAAGATCTTTTGTTGTACTCGCTTCAGAATAATGTGCTTCTCCACCGGAAACTTTCAACTGATAGTTGGATCGACCATAATGCAGGTCACCCTGACgactcgatagttacagcaattgacatcacatcaaatgggaaatttgccCTGTCTGGAAGCATTTCGGGAACATTGTCGCTGGTCGACATAGAGTGTTCT

Transcript

ENSAPQT00000020610

GGGAAGATGTTTTAGATGATCTTAAAAATGCTGACCTGGAGAGAATTCGTATATTATTTCCCAAAGTCGATTATCCTTATGATAACCTCTTAGCAGTCATTGATGTGAGCTATCAACGCCTAGACGAAAGTGTACGCGAGATGTTTCTATATTTGGCTATATTTCCAGAGGATACAGATATACCGTCAGATGTACTCGAGCTGCTGTGGTGTTCGATACAGAACCAGAGTGGAAAAACTTCGCGCAAACATCAGAAAGATATACTTGCTGTGCTCGAGAGAAAGTCGCTGATCTTaaaagGGCCTGAACTCCACGGAAAGAGAAGCTATCGTGTACACGACTTGCTTTTGGATTTTGCCCAGACAAAACTTCAAGACATGGGTACACTAAATGATGTTCAGGATAAGTTCGTGAAGACACTTCGTGGCCTGTGCGTGGATGGTGAATGGAATGATAATTCAACTACCTGCCAAAGAGACTATTATTTCAGGTACCTACCCtatcacatttattcttcGGGACGACATGGTGAACTACTTCAGCTGCTGTTTGATCTACACTGGCTcaaacaaaaagtgaagcaCGTCAACGTATTCTCTgtaatatcagattttcgttttgtggACACAGAATCGAAGGAAATCCAACTTCTCAAATCCTCGTTAATGTACTCTGCCGAAGTCATCAATGAAAAGCCAGATTCAATCTGTCCCCAACTCCTAGgcaGACTGCTATCTTATGAAGAGTATCCGGGGATAAAGACGCTATTAGAGCAACTCCGTGCAACATGCACGGAGACTTGCCGTCTTATACCGGAATTCTCATGTTTTGATCTTGGCGGCCCTGAgatctttcgaaaaacgtttgattTCATGGTATGCTCATTAGCGACGTCCAATTCTGCATCCGCTACTCTTGTCATTTCTGGTTTAAGGAATGgttcaatcacaatctttgatCTTGACACAGggaGAGAAGTTCAACAACTACAGGGACATTCTGAGGAAGTTAGCTGTTTGgctgtgtcacaaagtggaacaatACTAGCGTCGGGGTCGTGGGACCGAAGTACAATCCTTTGGAGAATGGACAGTTATAaacagctttttgtgttccaaGGGGAGAGCAGAGTTAATGCTCtggatttcagtgcagatgatcagcgagtgtttattggaacagacgatgggctgaaagtgtattgcgtatctaccggagaaaacctctcaGCAAGTATTCCTGAGAGAGTCGAGtcgctgtgtacgaccaaagatggacagttcattgctactgttggaGATGGAGACGagactatcaagttgtggaaagccgatacactaaatttCCAGGTcagtttggttggccataCAGATGAGGTGACATgtgttgtcgcaacagattcaggaaaaaacaatccaatgctTGTGTCTGCTTCAGACGAtgagacaataaaaatttgggatttaaaaacgtaTCAGGAAATTCGTACCCTTGACGTTCAATGTTATGTTACTTGTATTGCTGTGAGCGATGATAAAAAGAATATTATCTCTGGAGACGCTGGAGAAAGTGTGAGGTTGAGGTGTTTCCACACTGGAAAGTCCCTTTCCTGTTATGAAGGTCATACCGATTACATCAGcggTATTGCAATAATTCCCAATGCAAAGAAGGCATTGACAGCGTCATGGGATGGAAGTATCAGGGTTTGGAACCTGAGAACTGCTGCGTACATGAAACAAAACAGTCTCTCTGATCATTCAAATAACGTCACAGATATTAAAATCGCTCGTGATGAGTCTAGATGTGTTTGCGCATCTACAGATGgaactttcaaagtttggaatctcCACACACATGCACAGTGCTTTTCTGTCAcaggtgaccttgaatgggcaaaacatgttgcagtctctgCTGATGATCGCTATGTCGTGTCGCTGTCAAAGGATGGGCGGAATATCTCATTCTCAAGGAAGTCCTCGATAAAGgtgtggaatttgtcCGATGGCAGTGTGATCAAAGGAATTGATAGCGATGGCACACCTgagattgttcgctttagttctgatgggttgcaagttataattggatgcaAAGATAACCATGTGTTCATCTGGGACTGGCAAAAGCCTGATGCTTCTTTGAAAGACGTCATTTTACCCGCGTCCTATACAATGGAAATAGCATGTGATCGCaacatgatttacacatgcagccctgatatgcatatttgtgaaatcaatctcgacTCACTACAAGTATCGACTGTACGTCCGTGGGTCGCACCTGTAATATCACCCGACGGCAAAGATCTTTTGTTGTACTCGCTTCAGAATAATGTGCTTCTCCACCGGAAACTTTCAACTGATAGTTGGATCGACCATAATGCAGGTCACCCTGACgactcgatagttacagcaattgacatcacatcaaatgggaaatttgccCTGTCTGGAAGCATTTCGGGAACATTGTCGCTGGTCGACATAGAGTGTTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EPV5	Apoptotic protease-activating factor 1 OS=Rattus norvegicus OX=10116 GN=Apaf1 PE=1 SV=1
Q68EI0	WD repeat-containing protein 18 OS=Danio rerio OX=7955 GN=wdr18 PE=2 SV=1
A5DL92	Ribosome biogenesis protein YTM1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=YTM1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010175 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17908 all species →	APAF1_C	APAF-1 helical domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR041452 all species →	Domain	APAF-1 helical domain	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR050349 all species →	Family	WD repeat LIS1/nudF dynein regulation	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44129 all species →	WD REPEAT-CONTAINING PROTEIN POP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000018737.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.