Gene detail

Detailed information of ENSAPQP00000018799.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028392842.1, programmed cell death 6-interacting protein-like [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000020694

ATGCTAAACTGGCTCTGTGTTCCTCTAAAACGTTCTTCTAGTAGCGAAGTTGACTTCAGAAAACCTTTggaaaaattcattaaatcAACTTTTACATCAGAAACTTATGATGAGCTGAAAGACAGCATCAGCGAGCTAAATAAATTACGAAGTAACGCTGTAAATCGAGCACCTGAGAGACACCAGTCTTCTCTGGATACTTTATTGAGATATTATGATCAGCTTGTTTCCATGGAAAGTAAGCTACCTATATCAGAAAATCAGATTCGAATTACATTCTCATGGTATAATGCATTTGATAAAGGTTCCTGGTTATCCAGTAATAAAGCAGCCCTTGCTAGCGCTTCATATGAGAAAATGTGCTTGTTATTCAACATTGGTGCTTTGCAAAGTCAAATTGCTGCTTCTCAAAACTTGACATCTGATGATGGCTTGAAAACAGCTGCCAAGTATTTTCAGGCATCCAGTGGAGCATTTCAGATGATTAAAGATgacattttcagtgttttacATCAAATTCCTACTTCTGATTTGTCACTGGAGTCTTTGGCTGCCCTCATTGCCATAATGCTGGCTCAAGCTCAGGAGGCGTTTTGTTTGAAAGCTATCCAAGaCAAAATGAAAGATTCTATCATTGCTAAACTTGCAGCGCAAACCTCAGATTTTTACAGCAGTGCAATTCAAGCTGCTAATGTGACCGCAGCAAAGCAACTGTTTGACAAGgAATGGATTCCAATGTTGACTGGAAAGAAAAGTTATTTCTCAGCAATAGCAGAATATCATCAGGCTGCCGTTGCGAAAGAAAAGGGCACGTATGGAGAACAGGTTTCGCGACTCAAGGTAGCAATTGATCGCATCTCAGAAACTCAATTGTGGATTTTTGTCTTGCAGACATGGTCAGAGAAAATTAATCGTGCTCATGCCGAGGCCAAGAAAGATAATGACTTTATTTATAATGATCCAGTGCCTCGACCTGATGCACTTCAACCAATTGGTCGAGCTGTTCTGGCGAAGTCTGTGCCTCTGGGACCTACTCCTGTTACGAGCGGTTTcaaagatatttttgaaaagttgGTACCAACCGCTGTACATCAAGCTTTGCAGGCATTTGAATCAAGACAAGCAGAAATCACTAATATTGAAGTTAGTCGTTCAAGAGCCGCAACGCAGGAATTGAAGAGTGTTCTAGCGTCCTTAAATTTACCCGCTGCCATTGAAGATTTATCGGGTGAACAGGTCCCAAAGTCTGTATTGGAAAAAGCTGCGTCGGTGCGAGAGCAAGGAGGACTGGGTGCTATTGATCATCAGTTGCAGGCCTTACCTGATCTCTTAAATCGAAATCGCGAGATTTTGGATGAGGCTGTTCGTTTGTTGGACGAAGAAGAAAGACAAGATACTCAAATGCGAGAACATTTCAATGAAAAATGGACGCCCAAGCCATCAGCCGAATTGACAGTGAACTTGCGCGTAGATTGTGGTAAATACAGAGCTATTGTAGAAAATGCAACAAATGCTGACaaaattgttaaagaaaaatacaacacCCATCGACAGGCCATTGAACTGCTTTCGAAAACAGATCAAGAGATTGCCAGTAGTCTTCCAAAAGTTCAGACGTCAGGTCAGACAGCAAGTCCTACAGTGTTGGAATTACGCAAACTTATGGAAGAAGTTGAAACCATCCAGGCAGAACGCGAAGCTGTTGAAAGCGAATTTACATCACCATCTCAGGATATGGCTGCGAAATTCCTGGGTGCTCTTGCCGCAGATGGAACGATAACAGATCTTGAGGGAATTACCTTGAATGGTTTGGAGGAAAAATACAATCCTTTGAGAACACAAGTAGAAGATTCACTGAAACGTCAAGAAACATTAATAAATGAAATcaaggaaaaaaatgataaatttgttGCTGAGAAGACATCGGGACAAGCTGCAAGCGAAAGGGAAAagattttgaaagatttggcTGCTGCTTACGATGTTTACACAGAATTGGCATCGAATTTGAAAGAAGGAACAAAGTTTTACAACGACCTAAcagaaattttgttgaaatgcCAAACGAAGATATCTGATCTTGTATTTGCACGTAAAACTGAGAAAGAAGATCTCTCCAGACCTCCACGTAAGACGGATACACCTCAAACACCCCCTGCACCTCAACAACACCCTGTATCTCAGCAATACCCTGTACCTCAGCAAGCTGCTAATTTACCCCCACAATATCCTGCTCAAGGTTACGCCCATCCCACTAACCCATCTGCACCTTACCCAAGTCCACCGGGAGGATACCAACCAATACCAGCACCCGTTTATCAATCATATCCGAACTATGCCCCTCCCGGAGGTATAGCTTCGGTAGGCGCACCTGGGTATATGGGATATCCTGGAACACAACCATATCCTTACCAAGGCTATCCATATCAAGGTCCACCCGGCGGATATCCAAGACAGTAA

Transcript

ENSAPQT00000020694

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QZA2	Programmed cell death 6-interacting protein OS=Rattus norvegicus OX=10116 GN=Pdcd6ip PE=1 SV=2
Q9WU78	Programmed cell death 6-interacting protein OS=Mus musculus OX=10090 GN=Pdcd6ip PE=1 SV=3
Q8WUM4	Programmed cell death 6-interacting protein OS=Homo sapiens OX=9606 GN=PDCD6IP PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004844 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03097 all species →	BRO1	BRO1-like domain	Repeat	Interproscan
PF13949 all species →	ALIX_LYPXL_bnd	ALIX V-shaped domain binding to HIV	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004328 all species →	Domain	BRO1 domain	Interproscan
IPR038499 all species →	Homologous_superfamily	BRO1 domain superfamily	Interproscan
IPR045251 all species →	Family	Vacuolar protein-sorting protein Bro1-like	Interproscan
IPR025304 all species →	Domain	ALIX V-shaped domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23030 all species →	PCD6 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0071985 all species →	Biological Process	multivesicular body sorting pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12200	PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.