Gene detail

Detailed information of ENSAPQP00000018836.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4023239.1, TNF receptor-associated factor 3-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000020739

TCATAGCACATAGTATAAACTGTGTTTTAACACTGGTTTTGACCCACTGAATAGACATACTTCACGTGATATTTTGCTCTAAGCTGCCGAGATACAGTTGTGGGAGATAACCGAGATTTGGATCGCTCTTCTTCGTACAAtTCAATTTTCCATGATGCCGGGCATACCAATCACAGATGCAGATCGCCGGAAAATCGACAGGAAATTCATCTGTACAATTTGTAGTTTGTTGTTAAACATGCCGATGCAAACTCACTGTGGTCACTTGATGTGTTTTTCCTGCTTGCAAGCACTGTTCAAGAGTCCAAACCCAAAATGTCCAGAAGATAATACAAAAGTGAAAGAGGAACAGGCGTTTCCTGATGTTTTCACAGAACGTGAGCTTCATGGATTGCATTTACATTGTACCAACATGGAATGCCATTGGTCTGGAACATACGAAGACAAGGAGGATCATTCTCAGGTCTGTGAACATGCTCTGAAAAAGTGCGTCCATGCCCAGTGCAAAGTGAAGTTCAAACGCTCTCAATTGGCGGAACATCTGAAAAATGAATGTGAATACCGGTATGTGAAGTGTGAACATTGCAGAAAAGGTATCCCGTTTGCCTCAATAAAAGAACATGTTGAAACGAATTGTGAAGGTGCACCGGTGATCTGCAAGTACTGCAAGAAAGATGTTTTAAGAAAAGACCTTGAAAAACACGAGAAGGAAATTTGCTCTGAGGTCCCAGCAACATGTGAATTCCAGGCTGTAGGATATAGTCGGGCTGGGGAACACCGATCAACCCGGGAAAGTGCGCCCGTTACTTGCAGATATTGTAAGGAAAACGTTTCGAGAGAAGACCGTGAACAACACGAAAAATACGATTGCGGTGAAGCTCCAGGGGCgtgtgattttaaaaaaattgggTGCAACAAGGTTTTCTCACGAAAGGAGTTTCAGCATATCAATGGTGAATCGACGAGCCATCTGTGGTTGCTGCTGCAGCTTGTTTTAGGCCTTGTCTTAGTTTCCCAACAAAGCCACAATGTGTCACTTCACGAATTCACTGGAACTACACAGATTTCTCGTGACAACATGGATATCCGTGAAAACCAACGATATTTCACACGTGAAATCCGTCATCTACATGAACGGAATATGGAGTTGGAGCAAGCGTTGAGAGATAAGACGTTGATTATTGATCGTTTACAAAGTAGACTGGATCAAATTAACGAATCCCTTACCCTAAACACCGTCAAGATCGTCGACCTGGAGTCCCGAAGAGGTCCACGTTTCCAACAGGTTATCCGCAGTTACTATGGCACTTTACTTTGGAAAATTGAAAGTTACCAGAGAAAACGACAAGCTGCTGTCGATGGAGAGGTAACTTCTCTCTTCAGTCCACCTTTCTATAGCCGTCCGTTTGGGTATAAGATGTGTGCAAAAATTTACATGAATGGAGATGGCTGTGGAAAAGGATCGCATCTGTCGTTGTTTTTTGTCCTGATGAGAGGCGACTACGACGCTCTTCAAACTTGGCCATTTCAGAAGAAGATCACCATGATGTTGTTGGATCAAGGTGACGGGGATCACATGGTTGAAACGTTTCATTCAGATTCACAAAGTTCATCTTTCCGGCGGCCAACGTCTGACATGAATATCGCCTCAGGCTCTCCCCTGTTCATTCCGCTGGATAGTTTGGATGATTGTCAGTACGTCAAAGACGATGTCATGTTCATCAAGATTATCATTGATTGAGCGGAGGTCTTGTACTGTTTTCAACTAATCATTTTTaccttttttcttttttcaataattaatcaactttttgcgtctacgttgcttagcaacgtagaggctatgtaagcgtaaaatttctggcagGCAGACTGTGTTTCGACAACGAagatgacgtattttgacgtcacgagctctcaaggtaaacactaacactcaaacgttgttatctctaccgatggcagaaatttattttgggatcacttttttgggatacttagtaaccgcgcgtactttatatgttgtattgcaaaattctattcatataaaaggtttttaccggcaaatttgtcgagcttcgttagctcagACGATATGGTCACGACTCGCCAGTAGCGACCCTACAGGTTCGATTCTCGCGTGTTggctttttgtcattttgtgtttttttgtctCTTAGAATCTATTCAATCAattaaattttgccaaattgttAAATCGATTTGGCAATTTAAAATCCACTAAATCTATTAAAACcattaaaaacattaaatCAATTTGTCTATTTAAAATccattaaatttaaaatatgacaGAATGTGattatttattgtttagaaAGGTTTCCTTTAacttagttttaaaacttttccaAGGTAACTTTTTAAGGTCTTCGTCTAAGTCGTTCCATATCTTCACCGCTCTGCTGTGAAAGGTTCGTTGTCCAGAAACTGTTTTGTGTTGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12933	TNF receptor-associated factor 2 OS=Homo sapiens OX=9606 GN=TRAF2 PE=1 SV=2
Q60803	TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2
P39429	TNF receptor-associated factor 2 OS=Mus musculus OX=10090 GN=Traf2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000128 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21363 all species →	TRAF3_RING	TNF receptor-associated factor 2/3/5, RING domain	Domain	Interproscan
PF21355 all species →	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan
PF02176 all species →	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049440 all species →	Domain	TNF receptor-associated factor 3/5, RING domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR049342 all species →	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR012227 all species →	Family	TNF receptor-associated factor TRAF, metazoa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131 all species →	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0005164 all species →	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0009898 all species →	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000018836.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.