Gene detail

Detailed information of ENSAPQP00000019054.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3985736.1, RNA-directed DNA polymerase from mobile element jockey-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000021018

ATGGGACAAGATGGCAGCAAGTTGGCTTCAAAACGTCGCGTTGAACAGGTAGAAAAAGTGAAACTGTTATGTAAAGAAAATCAAGCTGCAATGAAGTTGAGTACTTCTGAAATCCAAACATTGAAGCAACTGTATCACAGACTTGCTGCTCTTTCTCCTGAGGATGAATACATtgacaaacaaacattTTTAAACTATTTCCCACTGGAAGGCGTCTTGGCTGAGAGATTGTTTGCCACATTTGACAAAGACAAGAACAATGTGATTGATTATGAAGAATTCCTGGGTGGCCTTGCGTTGTGTCTGGCTGGGACAGTGGATGAAAAATTTCAGCTTGTTTTCGACTTGTATAACATCGATGATGGCGATGGCATCTCGGAAGAAGAGCTAGCTATTGTTTTGAAGTCAACATTAATGGCCGCGAAAGCTGTGAATAAAACATACTGTGAAGAGAACGCTACGATTGTGGAGCCTATCAGAAATAGTAGCTTCAATGAAGATGTTGTCAAGGAATTGTTTGACGTTGATGAGCATGTGAGGAAAGTTGTTCATGACGCGTTTGAACAATGCGATACTAGTCAGACTGGAAAATTGTCTCCAGAAGAGTTCCGAAATTGGGCTGAGCGACATTCGTACATTCTCGATATTATTTTTAGCCACAAAAGTTTCACTGATAAACAAAAGATTTCGGAAAATATCACAGCTGCTGCAATGAAAGCTGCGGAAATGAACTCTATAAGATGCCAGACACAGACGTGGATAGACTCAAATTCTGCAGAAAACCTGACAGACAATTATCGTGGATATTCTAGAGCTACGTATCTGTGGAGTCCAGTATTTCCAGTGATGTTGAAAGCTCCGAAAACACGAAGTGAACACACAGCGTGTGTTTATCAGGGTTCACTTTATATTCTGGGAGGAAGGGGCAGCTGTTCACCCTTCAAAGATTTCTGGAAGTATGACTTGGCTCTCAATAACTGGTCagaaataccgaatactggcGAACAACCGTCACATATCTTTGGGCACACTGCTGTTTTACATAAGGGTTGCATGTATATTTATGGAGGAGAATTTGAATCATGCGAGACATTCGTGTGGAAATACTCATTTGATTCCAATGAATGGGAGAAAATAAAGTTTAATGCATTACGAGATGAAAAAGTTCCTATGAACAGGCGTTATCATTCCGCCGTAGTTTATCGCAACAAGATGTATGTTTTTGGTGGATTGATAGAAATTTGGGGCTCGACGGATGAGCTGTGGAGTTTTGATTTAGAAGAGCACACATGGGATGCGATGTACCAGCCTAACACACCTCTACCTGGTAAGAGATACGAACATTCTGCTGTTGTCTATAACAAAGCAATGTGGGTGACTGGTGGACTAGAAGTCTTCACTCCCAGAAACGATGTCTGGACATGGGAATTTGAAAAAGGTGCCTGGCGCAAAATTAAAAGCAAAGGTGGACCATTTCCAATCCGCGGTCATCGTGCTGTTAGGTGTGGCAATGGTATGTTGATTTTTGGCGGGAGTTCAAATGAAGAACATCAAAATAGAATGTGGAGACTGGAATTTGAATCTCTGTCATGGTCAGTTGTTAATCCTCACAGTGGAGTGTCTCCTCCAGCACGTTCAACAGCAGCTGTTGTTATTTTGTCAGCATTTTCCTTACCGCTACTTCCCCCCCAGATGGTAAATGCAACGGAGAATCCCACGAACGATAGTAGTAATAGGAAAGCCGCCCCCGAAGAACTCAGACCGCATAGCTCACCTGGTGTGAACAGCAATCCAACGAGTGCTTCATCCTATGAAAGAAAACCCCGTCATTGGGCCGTTTCCTCGGATTCCTTATACCACCAACCGGTGGCTTCGACTAGCGCAGATAAACGTTGTTCCGCTGGAAGTGTTGACGGATTCGCTgagaattttatttcatttaccAATGCTTCTTACAGCAGTAGTAGCGAGTGGAATGTTGggaaaaatgatattttcccgtTGCGTAAGACGGTACCAGACAGAAGCCTTTCGTTGGAAAGTCACGAAGAGGAAAGCTCGCAAAGTGAAAGAATGACAACTATAAGCAAAGAGGAAATTCGGGATGAAAAGCTTGAAGGAAAAACTAGAATGCGCCAGGATGCTGATTTCTCGCAGCCGAAAGAAGGATTGTGCATTTTCGTTATAGGGGGGAAATACTGTGGGAGTCATGAGTGTTTCGCGAAAGGTATTGATATTTGGAGATGCGATATTACCAAACGTGGGAAATCCAAAGTGAAAGTTCGGGAGATTAAGGTGCAAACAGCTAATGCGGTTCTTCCTGCGACAACTGGTCAAACAGACAAGTTTTTTATGACGTTTAGTGAGCCAACAAACAATACCAGCGATTCCTTCAACCCATTGAACGTAACAGACTCACACAATAGTAGTacaagaacatttaaaacttCTCAACACAATGTTCTTAGAACATCTGATAGGAAAATAGAAAATGAAGATGGCACAGAAACTCATTATGGAGATCTCGTTGTTATTGACTTGGGTAGTTCAACTCAGTCAAGCGTTAATGAGTAA

Transcript

ENSAPQT00000021018

CAGAGTTGACATGCAAAGCACTGTACCGTGCGTGCAATCaaacattaaaatatccaTCGATATTGAAAGGAAGTATTATTAGTCGAACCAAAATGATTATCGATGtacaattattatttttaaagacACTGTTGAGGACAACGTTTTCGAAAGATTCGTGTATTATCCTTGTTGTCGCCCAGAAACATTCTTAGACAGGACAGTGAGCCACTGCTGTGTTGTTGACACTGAAATCAtgatatttatataaatttatgcACTTCAAATTTATGGATACATCTTAGCTTCTTGGAAGCAAAATGGGACAAGATGGCAGCAAGTTGGCTTCAAAACGTCGCGTTGAACAGGTAGAAAAAGTGAAACTGTTATGTAAAGAAAATCAAGCTGCAATGAAGTTGAGTACTTCTGAAATCCAAACATTGAAGCAACTGTATCACAGACTTGCTGCTCTTTCTCCTGAGGATGAATACATtgacaaacaaacattTTTAAACTATTTCCCACTGGAAGGCGTCTTGGCTGAGAGATTGTTTGCCACATTTGACAAAGACAAGAACAATGTGATTGATTATGAAGAATTCCTGGGTGGCCTTGCGTTGTGTCTGGCTGGGACAGTGGATGAAAAATTTCAGCTTGTTTTCGACTTGTATAACATCGATGATGGCGATGGCATCTCGGAAGAAGAGCTAGCTATTGTTTTGAAGTCAACATTAATGGCCGCGAAAGCTGTGAATAAAACATACTGTGAAGAGAACGCTACGATTGTGGAGCCTATCAGAAATAGTAGCTTCAATGAAGATGTTGTCAAGGAATTGTTTGACGTTGATGAGCATGTGAGGAAAGTTGTTCATGACGCGTTTGAACAATGCGATACTAGTCAGACTGGAAAATTGTCTCCAGAAGAGTTCCGAAATTGGGCTGAGCGACATTCGTACATTCTCGATATTATTTTTAGCCACAAAAGTTTCACTGATAAACAAAAGATTTCGGAAAATATCACAGCTGCTGCAATGAAAGCTGCGGAAATGAACTCTATAAGATGCCAGACACAGACGTGGATAGACTCAAATTCTGCAGAAAACCTGACAGACAATTATCGTGGATATTCTAGAGCTACGTATCTGTGGAGTCCAGTATTTCCAGTGATGTTGAAAGCTCCGAAAACACGAAGTGAACACACAGCGTGTGTTTATCAGGGTTCACTTTATATTCTGGGAGGAAGGGGCAGCTGTTCACCCTTCAAAGATTTCTGGAAGTATGACTTGGCTCTCAATAACTGGTCagaaataccgaatactggcGAACAACCGTCACATATCTTTGGGCACACTGCTGTTTTACATAAGGGTTGCATGTATATTTATGGAGGAGAATTTGAATCATGCGAGACATTCGTGTGGAAATACTCATTTGATTCCAATGAATGGGAGAAAATAAAGTTTAATGCATTACGAGATGAAAAAGTTCCTATGAACAGGCGTTATCATTCCGCCGTAGTTTATCGCAACAAGATGTATGTTTTTGGTGGATTGATAGAAATTTGGGGCTCGACGGATGAGCTGTGGAGTTTTGATTTAGAAGAGCACACATGGGATGCGATGTACCAGCCTAACACACCTCTACCTGGTAAGAGATACGAACATTCTGCTGTTGTCTATAACAAAGCAATGTGGGTGACTGGTGGACTAGAAGTCTTCACTCCCAGAAACGATGTCTGGACATGGGAATTTGAAAAAGGTGCCTGGCGCAAAATTAAAAGCAAAGGTGGACCATTTCCAATCCGCGGTCATCGTGCTGTTAGGTGTGGCAATGGTATGTTGATTTTTGGCGGGAGTTCAAATGAAGAACATCAAAATAGAATGTGGAGACTGGAATTTGAATCTCTGTCATGGTCAGTTGTTAATCCTCACAGTGGAGTGTCTCCTCCAGCACGTTCAACAGCAGCTGTTGTTATTTTGTCAGCATTTTCCTTACCGCTACTTCCCCCCCAGATGGTAAATGCAACGGAGAATCCCACGAACGATAGTAGTAATAGGAAAGCCGCCCCCGAAGAACTCAGACCGCATAGCTCACCTGGTGTGAACAGCAATCCAACGAGTGCTTCATCCTATGAAAGAAAACCCCGTCATTGGGCCGTTTCCTCGGATTCCTTATACCACCAACCGGTGGCTTCGACTAGCGCAGATAAACGTTGTTCCGCTGGAAGTGTTGACGGATTCGCTgagaattttatttcatttaccAATGCTTCTTACAGCAGTAGTAGCGAGTGGAATGTTGggaaaaatgatattttcccgtTGCGTAAGACGGTACCAGACAGAAGCCTTTCGTTGGAAAGTCACGAAGAGGAAAGCTCGCAAAGTGAAAGAATGACAACTATAAGCAAAGAGGAAATTCGGGATGAAAAGCTTGAAGGAAAAACTAGAATGCGCCAGGATGCTGATTTCTCGCAGCCGAAAGAAGGATTGTGCATTTTCGTTATAGGGGGGAAATACTGTGGGAGTCATGAGTGTTTCGCGAAAGGTATTGATATTTGGAGATGCGATATTACCAAACGTGGGAAATCCAAAGTGAAAGTTCGGGAGATTAAGGTGCAAACAGCTAATGCGGTTCTTCCTGCGACAACTGGTCAAACAGACAAGTTTTTTATGACGTTTAGTGAGCCAACAAACAATACCAGCGATTCCTTCAACCCATTGAACGTAACAGACTCACACAATAGTAGTacaagaacatttaaaacttCTCAACACAATGTTCTTAGAACATCTGATAGGAAAATAGAAAATGAAGATGGCACAGAAACTCATTATGGAGATCTCGTTGTTATTGACTTGGGTAGTTCAACTCAGTCAAGCGTTAATGAGTAACTTTGTTAGACTAACGTTGATGGTGCCGTGTCACCTACTAAGTGATATGATTTTGTCGCCATAAACGTTTTGTTGCTCAATGAAggtaacaaaaagtaaaaataaaaaacataatttttggccgtaaaaaaatgttttcaattgaaaCACTGCCTGGAAACTCGGtaaactttaaaattagctATTTCTTTGTGCAgcctgaaatgcaacaaatatAATTGAGGCATCTTTTGATATATAGTTAGGTCGCTCACTACAACCTGTTGTTGTCCCTCAATACATCGAGACAcagtcctttgctcgattgggaaatggctGATTAAACAGAAGTGTTAGCTGACTTAGCccattaattttgtttgaaactATCAATGTGTTACGTGTCTGTTCTGCGAATCGTGTTAGCACAggaattcaaattttttgGATCGGATTTTTTTTGATTGTAGTGTAGAGTGCAAATCTtcattcattaatattcatagagCAATGCATGCAGGTCAAAATGGGTGagcgttagatcatatagagttaacgtaccatgacgtcatgattttaatataaccgtttatatagtattagtattagctgtgaactagttttatatagactaagatcccaacccaaaccctaaatactaaccctgaccatagagatcggcaaaatattgagcGAAAGACAAGTGTcgcaccggggcttgaactctaAAACAGCAACGCAAGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54C94	Ras guanine nucleotide exchange factor F OS=Dictyostelium discoideum OX=44689 GN=gefF PE=2 SV=1
Q6PIL6	Kv channel-interacting protein 4 OS=Homo sapiens OX=9606 GN=KCNIP4 PE=1 SV=1
Q8HYN7	Kv channel-interacting protein 4 OS=Macaca fascicularis OX=9541 GN=KCNIP4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003991 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR051568 all species →	Family	LZTR1/Attractin	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46376 all species →	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000019054.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.