Gene detail

Detailed information of ENSAPQP00000019609.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3991085.1, E3 ubiquitin- ligase NRDP1-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000021695

tatcCTGAAAACAGCGTGAGTGCTCTTAAACAGGAAATGAAACCTGAAGATATAGAGACATGCAGATCACGAGATTTGATCGAGGAAGTGAAGCATTACTCAGTTTTGCTGTATAGCTACATCGTGCTGCTTATCTTCTTGGGACATTTTCTGATAGTTTATGCAAATATAGTACTTTCATATTGCTGATTTCAGTGTCAGAAAGTGCATAAAGGAATAAGGAAATGAACGAAGAACTGAAGAAGCGAATGTGATCGTGTCatgtgatgataatgatggtggaGTAAAGGACTTGAATCATGGCGAGCTTGAATGACGTGCGAGGCTATGATGAAAGCCGTTTCAAGGATCGCGTCCGAGCGGAACTGTTTTGTTCAATTTGTCAAGAGGTGCTGAAAAACCCACAAGCCTGCGAGAACAAAGAACATACGTTCTGTCGTGCTTGCATATTATTGCACCTTGGAAATTCTCACACGTGCCCAGAATGCAGAGAAAACTTGTCTCCAGAAACCCTGAAAAATCCACCAAGATTTTTAATGAACTGTTTATCAGATCTGAGAATTTTCTGCGATTACAGAAGTCGAGGGTGCCCGGAGGACGTTCGCCTTGAAAATCTTCCGATCCATGTGGATCAATGTGAATTTGAACCTGTTGAATGTGGAAGATGTGGAGTTGTGGTCAATCGAAAAGATAAAGACAAGCAAGAATGCCAAGAACACATAACTCTAAAACCTCTGGAACCACGAATGAAATGTTACGAATCTGAAAAGACGGAAGTCAGCACTGATGACCTTGTGCCCAAATGTCACGAGTGCAAGGATATTAAAAGAAATCAAGAAAAAATGGAAGTCGAAATGGCACGTGTGAAGGAACTTCAAGATGACATTAAAGCCAGACAAGGTCAAATGATTGTGGAGCTGGGGGAAGTAAAAGATCAAATGCTAGGAGTGGAAAGGAAACAACATGACGTGCATGCCAAAGTTACACGGTTAAGCGAAAATGTTGACGAGATGAAAAGAACACTCGCGGAAATGAAAGTAGATGAAGTTTCGTTGAAAGCAGAGATGAGACAACAATTACAGAGAGTAACAGAAATGTTAAACCTGCTCTTGCAAGGATCTAATGCAAAGATTCAAGCTAACGCTACATACTCAGTCTATTGGCCCAATAATAACCCAGAGATTATCATCATTGGGGGTTGGTGTGCGCCTGGTAAAGAATGGATATTAAATACCGTggaaatatacagtatatttgatGGAAAGTCTACATATCTACCACCGATGAATCAACCCAGAGTGGAAACAGCCTCGTGCGTTTTTAACAATGACGTAATTGTTGCAGGTGGATATGATGGTTGCGTATGTACTGACAGCATAGAGATCTTGCAGATGGACCAGCACCCTTTGCGATGGGAATTGTTTCCAGGCAAATTACCCGCGAAGTTATCCAGCCATTCCCTGATAGTTTATCAGGACAAGTTACTCGTCATTGGTGGAATGGATATGAGTGACAATTATAAAACATCGAATGTGATTTACGAGATTTCACTCCTCCCGCCTTACACTTCTAAGAAATTGTTTAAAACGCTTCAGGCAAGACGAAATCACAGGGCAGAAGTTGTAAATGATAAACTGTTTGTGTTGGGAGGAACGCCGTCAGGTTTAGCAAAAGATGCCACGGATAGTGTAGTTTACTATGATTTGATAAAAAACGAACGCAAACGATTTGAAGCCTTACCCTATCCGGTCAGCGGAATGTCTACTGTCAGGTGGGAAAGTAGGATCATTATGATTGGTGGCGCAAATAAGAACGACCAGGTTTTAAGTGACGTCAACGCGTACGAAACAGTGACCGGTAAAACGGAGAAACTGCCGTCCATGGTATACAGAAGGTATGGTTCCTCAGCAGTTATTTTGGAAGGCGTAATTTATGTTATGGGAGGATGGAATCAAGAGCAAGGCTATCTCAACTCGGTAGAATGTTTGACCATCGGAAATGATTTTTGGGTAGAATTGGCAGGActgaaagaaagaagaagatTGGCATCTGCTGTTGTAAAACCTCGACATTAACAtggtttgaaataaaattacgAACTCAATTACGAAAATAATCAAACATTGGAAATCAATaaaacttttatatttttagatatttatttcatgtaTTCATACCAAACCTacaaaaattcaattcaaatatACTACAATAACTATATTTATTCTCTATTGTTTCATTCAGTTTTATATCTTGAGAAAACCCAAACTTGTGAAGGACTTCCATTACATGGGTTTACAACAGGATTTTGAGATTGCATCGAAGGACCACGATCGAGACATTGTCCACTCACTTCATGCTTAATTATGCCCTAAATGTGAGAAAAAAGTATTTAAAGCAGTTCTTGAATGTTTGTACAATCCTGATGATTTTATATTGCAATGAAATATTGTATGAAATACTTACGGATTTTTTATCATGAATCCATTTTTGATTTCCTTCCATACCATGACATGGAATAAGCTCAACTGAGGCCCCAGGATTGTATTTGGAATTATCAACGCAATTTTCACTTTCCCACAAGATTTCGCCATGTGAAGACAGCACAAAATACtgcaaaaattgaagaatTACTGGATAAGGTTGAGCGTGAGGTCGGCAGAGGTTATGCCAACCGATGCCTTTAGTTGATAACTGCCGATATCACGCGAGAACCGAAAtggttttaatttaattattggggggtttttcaaaaataattcaaataaaTTCAGTAATTTGACAAGAGCAGAAACTGTGGAAGATCTCGCCTTTGCTTGCTTTTTGtatgagaaaaaaaaaacactgtgCTTTGGCAGATTTGCGAGAGTCAgaaaaaatgacgtcatagctCCCTGGTAATAAGTTGTGTACCTGATTATTTCCTTGACCATGACAACTATACAAGCCTAACTTATTTCCGGATTTCATCCCAAGAGAATCCAGACATAAACTACTTTCAGGATTGCGAAtctataaaatatatagaaatgaTACAAATGGGTCGAACAAGTCCTGCGTGGAAGATATGAAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UPQ7	E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens OX=9606 GN=PDZRN3 PE=1 SV=2
P68907	E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus OX=10116 GN=Pdzrn3 PE=1 SV=1
Q69ZS0	E3 ubiquitin-protein ligase PDZRN3 OS=Mus musculus OX=10090 GN=Pdzrn3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000354 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR051746 all species →	Family	Kelch domain-containing protein 8	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR011043 all species →	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46260 all species →	RING-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20677	HAYAN; serine protease Hayan	EC:3.4.21.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.