Gene detail

Detailed information of ENSAPQP00000019850.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028404631.1, syndetin-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000022024

ATGGCTATTCGAAGCCGTTTTCGTTCACTTCTTGGCTTGGAGCACACAAGAAAAGAGCTAGAGAGTGGAAGTTTGGATGAAAACAGTGTTGGATCTGCTGTGTTTAAGGATGGAGAGAGAGAATTTGAAAGTGATCCATTAAGTAATGATGAGGTTATTTCCACAATAGAGGAGATTTATTTTCATGAAGTTGATTCTTTTGATCCAAGCAACCATGAGCTGAAgAAACTGCCAGATGTGTTGAACAAGGAGGAATTGGATGAGTACAGGAATGTATTGAGAAGACAGGCTCAAGCAGTTTCCAAGAAACTTTATATGAAAGTTCTGGATAACCAGAAATCATATATGCAGGAATTGCAACGGGTTATTGACATCCAAGCAACCCTTGAGCTTGCTAAAACAATATGCGACAGCGGACGAAGTCACTTGGACCACTCACGAAGAGAGACATCATTGGGAGGTCTTACTGTGTTggcaaaaaatagaaaaaagcAACATTTAATCAATGTACTTGAGTCATTAGGAACCATTAAAACTCTTCAACAAACTGATGTTCGACTAAGAGAAATGCTGGAGGAAGAAGATTATCCTGGCGCCATCAATTTGTGTCTGGAGTGTGATAAGGCTGCCCGTGCTTTTAAACATTATAAGTGCATTAGTGAACTAAGTGCAAACCTGCAGGATATCCTTATACAAATTGAGAGCGAGTTGGACAGTGCTCTGGCTAAAACGTGCAATAACTTTGACGCGTTGCACTATGAGAAATTGCAAACTGCTTATAGATATCTTGGGAAAATACAGGTTGCAATGGATCAACTTCATCTTCATTTTATGAACTCCATCAACAGTGAAGCATTTCTTGTATTATTAAAACATGTGGAGGAGAATTCTCCAGAATATTTGAATGAAGGTGGTATTCAGACTATCCCATTTCAAGACCTTTGTCAGAAAGTTGGAGTTGAAGACTTCACGCCATGTTTAGTTGATTTATGCAAAACCCTGTGGAAAGTGATGTCCAACTATCATGAAGTAATGCAGTGGCATCAGCAACATGATGATCTCACACAGGGAGACGAAACTGATGGTGAAGCCTCTTATAATAGGAAATATGTCACTCAGAAGTTGAACCACGGACTACACAGAATTTGGAAGGAAGTCCAAGAAAGAGTGAAGTGTTATTTACTGGGAACGGACttatcatattttaaataCGACGATTTTATTCATGTTTTAGATTTAGTAAATAGATTAATTGCAATTGGGGAAGAGTTCTGTGGGAGTAAATCGGAAGAACTTCATGATTCTATTAGAACACAAACCGGGAATTATTTCAAGAATTATCACagATCTCGGTTAGAAGAACTTCGGATGTTTTTAGAGAACGAAGTTTGGGAGTTGTGTCCTGTGAAGGCAAATTTTTCTTTAGCTAATCTACAGGAGTTCAAATTTCTCAGGAAAATCTATCCAAGCAAAGGTCATGCAAGGACAGATTCTGGAAACATTAAAGCTGAAATGAGTTTCTTCTCTCGGTATGGATCGGGTACCACCCCATTTGATGATCAGAAAGGCGAGGACGAAAGTGAAGATTTACTGTCAACTGTTAGCACGGGTGTTGATGGTGATGTTAATGACAATCATGAAGATGACGAAGATGAgtatgaagatgatgatgaagatgttcCAGATGAACTAAAGTTGGATTATGTCGACGAGAAAACTGGAGAACCGTCACCAAGAGCGAACTCGCATGCGAAACTTGGAAAAAAGTTAAGCAAAAACCATGGACCAATTGTTACCAACACAACCTTGAATGTTCTGAGATTGTTTGGAAAGTATATGCAAATGAtgaacgttttgaaacctaTCGCATTTGATGTTGTGATTTGTGTTTCGCAGCTGTTTGATTATTACCTTTTCACTGTTCAACGATTTTTCTGTCCGAATGTTATGGATGAATCAAAAACTCCTGATCTCAGTACCAAGTTATTTACATCTCTTAAACGTATTAAAGAAAACTTAATTACAGACAACTATTCGTCGCCCAACGCTACAACAGGTGATGACATGAGGATTCCTTCTCCGTGTCTTTCTCCTATGACTCAACTGGAAAGCTCAGAAGGATTGTTTGGACTATCTGAAAGAATTATCGCTACTGAATCATTagtgtttttagcAAAGCAATTTGAGTCCTTGCAACCTCATTTAGAATCTCTTATTCCAATGGCTAAGAGGGCATTTCTCTCTCAATTTTATTCACAGACTGTTTCTACGGCGCATGAATTAAGAAGACCAATATACCAAGCTGTTGCTGGCAGAGTAGTTGATTTCAATATGATCATTCATTTGATGTCAAATGTGAAATGGGACATCAAGGAAATCATGTCAGAACATAATACATACGTGGATATGTTACTCAGGGAGTTGCAGTTGTTTAGTATGAGGATCTCGCAAATTGGCAGattAATTCCAATTCCCAATGAAGTTTTTACAATTTTGTGGGATCATTGTACTCGTCGAGTAAACAGATCCTTTGTAGAAGGGTTTTCGTGTGCAAAGAAATGCAGCAATGAAGGAAGAGCTCTGATGCAACTggattttcaacaatttttaataaaattggaaaaacTAACGTCTTTAAGACCCATTCCAGAGAAAGAATTTGTTGAAGCGTATGTGAAGGCTTACTACTTGACGGAACCAGATATGGAAAGATGGATTCGAGAACACAAGGAGTATTCAACGAAACAACTCACGAGTCTTGTCAACTGTGGTACCGGTTCGCATTTCAGTAAGAAAGCCAAGCAACGTTTACTGGTTGTTATAGAGGAGACAGAAAAATCAAGAACTCGATGA

Transcript

ENSAPQT00000022024

CAGACTATGAGACCataaaacttgtcaaattCGTCGCTCGAACTTTGACTCACAAAGACgttaatacttttatgtaagAAATATATTCTGCAGTGCTAAAAATCTTACCCAATTATAAGAAATGCATTCCATCGACGGAATTTTAAACCCAAACTGTAAGGAATTCACAACTGGAACAAGTGCcctgcaaaaatatttccaaaataTTCGAAAATATGGTAAACATGGCGGACGATTGTTGAGTTGGAAAAATAATCCATGGCTATTCGAAGCCGTTTTCGTTCACTTCTTGGCTTGGAGCACACAAGAAAAGAGCTAGAGAGTGGAAGTTTGGATGAAAACAGTGTTGGATCTGCTGTGTTTAAGGATGGAGAGAGAGAATTTGAAAGTGATCCATTAAGTAATGATGAGGTTATTTCCACAATAGAGGAGATTTATTTTCATGAAGTTGATTCTTTTGATCCAAGCAACCATGAGCTGAAgAAACTGCCAGATGTGTTGAACAAGGAGGAATTGGATGAGTACAGGAATGTATTGAGAAGACAGGCTCAAGCAGTTTCCAAGAAACTTTATATGAAAGTTCTGGATAACCAGAAATCATATATGCAGGAATTGCAACGGGTTATTGACATCCAAGCAACCCTTGAGCTTGCTAAAACAATATGCGACAGCGGACGAAGTCACTTGGACCACTCACGAAGAGAGACATCATTGGGAGGTCTTACTGTGTTggcaaaaaatagaaaaaagcAACATTTAATCAATGTACTTGAGTCATTAGGAACCATTAAAACTCTTCAACAAACTGATGTTCGACTAAGAGAAATGCTGGAGGAAGAAGATTATCCTGGCGCCATCAATTTGTGTCTGGAGTGTGATAAGGCTGCCCGTGCTTTTAAACATTATAAGTGCATTAGTGAACTAAGTGCAAACCTGCAGGATATCCTTATACAAATTGAGAGCGAGTTGGACAGTGCTCTGGCTAAAACGTGCAATAACTTTGACGCGTTGCACTATGAGAAATTGCAAACTGCTTATAGATATCTTGGGAAAATACAGGTTGCAATGGATCAACTTCATCTTCATTTTATGAACTCCATCAACAGTGAAGCATTTCTTGTATTATTAAAACATGTGGAGGAGAATTCTCCAGAATATTTGAATGAAGGTGGTATTCAGACTATCCCATTTCAAGACCTTTGTCAGAAAGTTGGAGTTGAAGACTTCACGCCATGTTTAGTTGATTTATGCAAAACCCTGTGGAAAGTGATGTCCAACTATCATGAAGTAATGCAGTGGCATCAGCAACATGATGATCTCACACAGGGAGACGAAACTGATGGTGAAGCCTCTTATAATAGGAAATATGTCACTCAGAAGTTGAACCACGGACTACACAGAATTTGGAAGGAAGTCCAAGAAAGAGTGAAGTGTTATTTACTGGGAACGGACttatcatattttaaataCGACGATTTTATTCATGTTTTAGATTTAGTAAATAGATTAATTGCAATTGGGGAAGAGTTCTGTGGGAGTAAATCGGAAGAACTTCATGATTCTATTAGAACACAAACCGGGAATTATTTCAAGAATTATCACagATCTCGGTTAGAAGAACTTCGGATGTTTTTAGAGAACGAAGTTTGGGAGTTGTGTCCTGTGAAGGCAAATTTTTCTTTAGCTAATCTACAGGAGTTCAAATTTCTCAGGAAAATCTATCCAAGCAAAGGTCATGCAAGGACAGATTCTGGAAACATTAAAGCTGAAATGAGTTTCTTCTCTCGGTATGGATCGGGTACCACCCCATTTGATGATCAGAAAGGCGAGGACGAAAGTGAAGATTTACTGTCAACTGTTAGCACGGGTGTTGATGGTGATGTTAATGACAATCATGAAGATGACGAAGATGAgtatgaagatgatgatgaagatgttcCAGATGAACTAAAGTTGGATTATGTCGACGAGAAAACTGGAGAACCGTCACCAAGAGCGAACTCGCATGCGAAACTTGGAAAAAAGTTAAGCAAAAACCATGGACCAATTGTTACCAACACAACCTTGAATGTTCTGAGATTGTTTGGAAAGTATATGCAAATGAtgaacgttttgaaacctaTCGCATTTGATGTTGTGATTTGTGTTTCGCAGCTGTTTGATTATTACCTTTTCACTGTTCAACGATTTTTCTGTCCGAATGTTATGGATGAATCAAAAACTCCTGATCTCAGTACCAAGTTATTTACATCTCTTAAACGTATTAAAGAAAACTTAATTACAGACAACTATTCGTCGCCCAACGCTACAACAGGTGATGACATGAGGATTCCTTCTCCGTGTCTTTCTCCTATGACTCAACTGGAAAGCTCAGAAGGATTGTTTGGACTATCTGAAAGAATTATCGCTACTGAATCATTagtgtttttagcAAAGCAATTTGAGTCCTTGCAACCTCATTTAGAATCTCTTATTCCAATGGCTAAGAGGGCATTTCTCTCTCAATTTTATTCACAGACTGTTTCTACGGCGCATGAATTAAGAAGACCAATATACCAAGCTGTTGCTGGCAGAGTAGTTGATTTCAATATGATCATTCATTTGATGTCAAATGTGAAATGGGACATCAAGGAAATCATGTCAGAACATAATACATACGTGGATATGTTACTCAGGGAGTTGCAGTTGTTTAGTATGAGGATCTCGCAAATTGGCAGattAATTCCAATTCCCAATGAAGTTTTTACAATTTTGTGGGATCATTGTACTCGTCGAGTAAACAGATCCTTTGTAGAAGGGTTTTCGTGTGCAAAGAAATGCAGCAATGAAGGAAGAGCTCTGATGCAACTggattttcaacaatttttaataaaattggaaaaacTAACGTCTTTAAGACCCATTCCAGAGAAAGAATTTGTTGAAGCGTATGTGAAGGCTTACTACTTGACGGAACCAGATATGGAAAGATGGATTCGAGAACACAAGGAGTATTCAACGAAACAACTCACGAGTCTTGTCAACTGTGGTACCGGTTCGCATTTCAGTAAGAAAGCCAAGCAACGTTTACTGGTTGTTATAGAGGAGACAGAAAAATCAAGAACTCGATGACATATTCATAAGCGTGAATGCAAGTCTCGCTGGCGGAATTCGCGTTCAATTCTGTGGCCAAGAGGGGACTTTCACGTCAAAGTAGATTTAGGAACTTTTCTAcgaatttcaataattttagaTTTTTATATGCACATGTTCTATTATCTTTGACGTCccttaatatttatatacctacaacagcagaaatttgaaattattttgagGTTGAGAAgttctttaatttcaaaacttgGTTGGAAATGTTCGCGAACTGTAATCAATTCAATAGCAATTATGATGTAAGCTAGTTGAGCTAGCTTAAAATGTTATGTAATTTCGTCATTTTAGTTAAGAATTTGACATAAAATTTTTGCAGTAATTATGTCACATTGCTGTATATTCTTCTTGAAagaatttgtataaatatccCAAAAAATGCAATCCTAGTGAGTAGTGTTTGTCTTCAGACACATCTTTTCTAGATTATAGCCTATTGCTGTCCATGTTGTATTCCAGACTTCCAGTTGAAACTGCTGGTAAATATGTGGTGCACAACCGttaaaattttcacaaaaaagggaaaaggttttagtagaattgtcTTGGCCTTTTTCACAGGAATGGTGCCATACTTTCCATTGGTGGAAGATATGTCCTTGGTTTTCTCAGGGCGCAATAAAACACCGCCCAATCGCTATAATCTATATGTCAGGGCATTCAAGAGAGCCATAACACTCCCGAATGCACGATTATAATGGTGACCTAAATTCGCAACGGCCTTATATGCAAGTGTAAATATACAGCTAAAgcccctgttacacgatgcaatttttcttgcaacttgcaacgcaattctactgttagTAAGAGATGTGATGTTGGCAGGTACgagtct

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96JG6	Syndetin OS=Homo sapiens OX=9606 GN=VPS50 PE=1 SV=3
Q8CI71	Syndetin OS=Mus musculus OX=10090 GN=Vps50 PE=1 SV=2
F1LSG8	Syndetin OS=Rattus norvegicus OX=10116 GN=Vps50 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003524 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10474 all species →	Syndetin_C	Syndetin, C-terminal	Repeat	Interproscan
PF10475 all species →	Vps54_N	Vacuolar-sorting protein 54, of GARP complex	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019514 all species →	Domain	Syndetin, C-terminal	Interproscan
IPR019515 all species →	Domain	Vacuolar protein sorting-associated protein 54, N-terminal	Interproscan
IPR040047 all species →	Family	Syndetin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13258 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:1990745 all species →	Cellular Component	EARP complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23288	VPS50; syndetin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.