Gene detail

Detailed information of ENSAPQP00000020530.1 in Leptogorgia sarmentosa

Genomic Location: chr3:19900312...19905528
NR annotation: CAB4023318.1, hypermethylated in cancer 2 -like isoform X3 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSAPQT00000022942

ACCCCACTTAGAAATCTCGAGGTATGATTGGTCAGGATGTGAATTAAATGATCTTTGCGGCTGACATGGAATTCTCAATAAGGGCACTCAAACAGAGATATCCCGCTGATCAAGTTATAAGATACCGAGTCtctttactttgaacattcaCCGATTCATGCTCTCTTAAAAACGTTCAAGTACTTCAAACGATCTTTTCTTATCACGTTTTACAACTTTACAGGATCGTTCCTAGAGCATAGTCAGTGTACCAAGAATTGGACATCATAAGAACTTCGTGTTACCTCAAGGTGAAAGGAATGAGTCAGTCTGAATCTGGGAGCGCGGTGTATGGTAGGCAAACTAGTCACAATTCAATGTAtcaaacatttccaaatgATTTTCACCTGACAAATATGGATAACTGGAATGGCAAGATTGAGAATCAAATATCGAATCAAGGATCCACTCACTATCAAGCTAGTAACGAGCCTCACTTCTCTAGATCGGCTATGACTGCGCAAGCGAATTCTGCGTACAATTCAAGCAACTACGGTGGCGTGCATGCATTTAATTATAGCAATAACATAAACGATAACTCAAGATTTTATCAAGTGAACGACGAACATCTGTCGACGCTAGGATGTAATGAAGGCAGCCATATTGAACGAAATCTTAGCACAAAACTATTCAATCCTTTTTCTTTGAATCCAGAAACAGCCACATGGTTCGGTGAGGAGCGTGCTATGCCAAGCACGCAAGCACGGCCTTATAGTGGCTATACAATGACAAATCCAGCTCTTACAAGAAGTAACAGTTGTTCTAGTTTCCTTCCAGCAAATGAAATACGCGGCAATAGTCAAGCGAGAATGGAAAACGTAAGCCGGCCGCGTACACTATCCAACGTCTTACCCGCAAATGTATCAAAACCTCAGATGAATACCAACAACGTACCCACATTTTGTTCCCCGTACGATGACCCTGCCCGGGAATTCAATAAAAACGCAATCATTCGTTCAATTCAGTCCTCACGAACTGACTCTAACAATATCACAACAAATCCTTACTCAGATTATTTCCTAAGCCAGAAATTAGCTGAAAAAATTCCCCCACCAGTTGTAAAAGTCGAAGAAGGATACGATAGACCTGTGCCTGCAAAGAGAAGCCGACCAAACTTTAAGTTGGAAAAACCCTCAAAGGTTACTGAGCAGAATAAAGACAATCGATATGATAACCCATTCACAAATGACGATCCTTTCACGAACAACTGGATTGTACAAAAGAGCGAGTCACAGCGTATTATGGAGGAACATTTAGCGACAATGACTGAAGCAAGAAATTGGCAAAACACCCTCTATCCTGACGTTTCGAAAGGTAAAGTGCCCGAAGGCAAACCAGCACAGGAAAGTGAACCTTATAAATGTGACTGGACGAATTGTGGTTTAATTTTTCCCGAACAAGATGACCTGGTTCGACATATTGAGAAAGTTCATATCGATCAAAGGAAGGCAGACGATTCCTTTGTCTGTTACTGGGAGAATTGTGTTCGTAAGCAGAAACCTTTCAACGCGAGATATAAATTGGTGATTCACATGCGAGTTCACAGCGGAGAACGTCCAAACCGTTGCACGttTCTGGGATGTAATAAAGCGTTTTCAagattggaaaatttgaaaatacatCTTCGTTCTCACACGGGCGAGAAGCCATATTTATGTACATACAGAGGTTGTCCCAAGGCTTTCTCGAACTCATCAGACAGAGCCAAACACCAGCGAACACATATTGATACGAAACCTTACGCGTGTCAGTTTCCTGGCTGTCCCAAAAGATACACGGACCCAAGTTCTTTACGAAAACACGTCAAACAACATAACGACAAAACAAGACAACCAGGGAAAAGAGGAGGCAGAAAAGGACGAAGCAAAACTGCCAAGAGCAAAAAAGAACTGCTGGCTGCAGCAGATGCAAATCCTTTGAAGTTTAACGACGTTACGTCAAGCGAGAACGATTTAATTATACCAACATTTGTCGATACTTTAAAACCAGTTTTATCTGGTAATTAgtcatttataattatataaaatttaggATATAAAGTGacgaattattttaaaatgcacAGTAAGGGACATTGTATGCGGGGGGTTTATAGCTACATCTTGTTTATGATATATTGTTAGGAGGGTCTCTATGTAAGATAATGTTGATACTGGAGCACTCTGTATTGTGTTATTATGTAATGAATTCTATAAAAAATGACTATATACAACTTTGTAtttatttctaaaaatttctaaatgtaaatattttcaaaaactcttaatgTTTAGcattcaaactgttttttgaaCACGACTGTCTGGAATTTTTTTGGATTATGGATTGTCGAAATTTCTGCGATAACAGTTACAATGTGAACTTTTGTCATTTTTGATGGCCTCTGAGAATTGAAAATGAAGTTACCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NEA6	Zinc finger protein GLIS3 OS=Homo sapiens OX=9606 GN=GLIS3 PE=1 SV=5
Q6XP49	Zinc finger protein GLIS3 OS=Mus musculus OX=10090 GN=Glis3 PE=1 SV=2
Q8NBF1	Zinc finger protein GLIS1 OS=Homo sapiens OX=9606 GN=GLIS1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004801 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR043359 all species →	Family	C2H2-type zinc-finger protein GLI-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45718 all species →	TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09232	GLIS1_3; zinc finger protein GLIS1/3	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.