Gene detail

Detailed information of ENSAPQP00000020716.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4041957.1, schlafen family member 13-like, partial [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000023172

GCTGAATGTTCAAGGCATGATACATTTTCATTCCAGGACAAAATTCTCCTAAGCGAAGTAAGCAGAGTGGCAATGAGTATCTTCCATGTGCCCAAAGACAAGAAGAAAGATACACTTGACAAGCTGATCAAGCACATTGTTGCTCTTCTTAACTCCGTTGGTGGAGTTATTcgaataaatgaatataaaaacGACAAAGCACATATAACCAGCCTGCGGGACAAATGGATGCTAACCCTGGAACAAAGTCTAGTTTCGATGATGAGACAAGATGAATACAAAGAATGCGTTCACTTATTCCCAAGGCCTTATCCGGATTATTACGTGTTTGTAAGAATGGGCAAACGTGTTTTCACACAAAACAGTGGAATGAAAATTCCTTTATCTCGAAGCATTTCGAATCCAACTTACGAGGACATTGTGAAGATTCTCGACCGAAAGGGCGTGATTGAAATTGAACACAGTAGTGAATCATCCCTTGAAATGAATGAGGAAGAACGCGTGGAATGCGGTCAAGATAGTGATTACCCTGAAGATAATTCTAACAATTTTACTAACCAGAAACATActgaatttcattttgacGATAAAGTTCTGTTTGAAGAAAGTGATTCCATACAATTTAAGTTGATCAATGATGGAGCAGCTACAACATTAAGCCATCTGCTGAAATGCATTGATAAGCATTTACCGAAATATGTTTCTGCTTTTGCAAATCACCGCGGCGGTGATATGTATTTTGGAATTGGTGACGATGGGACGGTAAAGGGCCAACTTGTTAAAGGTGAGGATGAGAAGATGGAGGTTAAAAAGATGGTAGAAAAAATCATGAATGGAAAGAACGAGAATAACGAAAGTGTCCGAATTTGGGGAAAGTCAGATTTCATCGCTAAGTATGGTGAACAATGGTCAGTTGAATTTGTCAAAGTTATCGGTGAACCAGAAGATGAAGAAAgatatgttgttgttgtacataTATATTCTTTCATTGGCGGGATGTTTTTAGAACGTCCATTAGCCTGGAAAGTTGATGAAACAGAGAATATCGTGGAAATGGATTTTGACGAATGGAAAAATAGGCATATCTCGGAATCAGCTGAAAAAGGATTGAAGTTTGTTCCAGAAAACTTCGTTGAACGGTTCAAAGCAGAACGACACACAGTTTACATTCAACATCTACAGAAAATACTCCAAAAAAGTTATTCAAACACAAGAGGATTTGCAATGTTCGATAAATCATGGTCGGGAAATGTTGGTGCTGGTCCTGCTCCAGAGGGGGTGATATGTGACGTGTTCATTATGAGTCATACCGGAATGCCCCAAATGATTACTTTAGCTAGTGAACGTTCACAAGAGGTCATAGAGTACAACGTTAACCTTGCGAAGAAGTTGAAAGCGGCCCTTGTCAGCAAAGGCGGTTGTCTTCAGCTTTTTGTAGTCGAGGCTCAGATCATTGCAATAAATGATGTCCACGCCGAAATGGGATTTCTCTGCCCAAGTGGCCCTCACTGTTATCCTCCTGCATATACTATGACCCCGCtgtcattttcaaaaatcagAGAGGCCCTCGTCATAGTCCTTGCTGGATTTGAATCGTCTTCCTTTAACCCAAAAGTTGGTGTTAGTTTCCTCTACGTTCTTACTCCagaacaatataacatcagCATTAAGGAAGATCCATTCGTAATGGTAACTGGACCGCCTGGTACAGGAAAAACCGTCGTCGCTATGgaaagaataaaaaaattgcGAGCAAAAAATGTTCCAAAAGATGAAATCCTTTATGTCTGTGAAAATAAaCTTTTTGAACTATTGATGCATTTGTTAATTGTAGGAAACGACTGCCTGACGACGACAAGAGAGAAATTGATGTCAAAAATAAAACAGGGTCAACACAGAGAATTTAATAAAGTTCGGCATGTGGTGGTGGATGAGGTGCAGCATTTCCGTAATAAGACTGGAGAAGATTGGCTCGAGAGTATTTCGACGAGTATCTTAAAGTGGACACCTGATTCACAGCAACACTGCGACAACACATCACTGTATATTTTTGGTGATGGACTTCAAAAGATCAGGCGCGAATGTCTTGGAATACCAGATCGCCCTCGTATGATGTTACCTGTTCCAACGAAATGTCAACTAAGCACCGTGATTCGTAACAGCataaaaatctacaaaaaatGGGAAGAGATTGCACTGGAACAGCCCGATTTCGAACAGAAGAACCACCTAGCAATAGGTCATGATTACCAGGGACgagacattaattttgttgagATATCGAGCGATTGTGaaaacgaaattttcagtaaaGTTGAAGGAACAATTCGACAAATCCTCGACGAGAAATCGTATAAAGCTATTGAAGTTGCCGTTCTGTTTAATGAGAAAGGCCTTGCtgaaaaatttagaaaacacTTGATACCCCATTTTGCAGAGTTAAACATACCTGTCACTGATGCAGAGGTATTTCCACGCAAAGGTTTGGTGGTAGATAGTTTCCGACGCTTTAATGGGTTGGATGCACCTGTTGTGGTGGCGGTTCTCCCCAAAACATATTCAAAATACGAAGatataaataaagtaaaaatcTTGTTGTACTCTAGAGCAATGGTTGAATTCCATATTATTTTACTTGCAGAGGCGCCGGAAGCCACCTGA

Transcript

ENSAPQT00000023172

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68D06	Schlafen family member 13 OS=Homo sapiens OX=9606 GN=SLFN13 PE=1 SV=1
Q5U311	Schlafen family member 13 OS=Rattus norvegicus OX=10116 GN=Slfn13 PE=1 SV=1
B1ARD8	Schlafen family member 8 OS=Mus musculus OX=10090 GN=Slfn8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001950 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04326 all species →	SLFN_AlbA_2	Schlafen, AlbA_2	Domain	Interproscan
PF13401 all species →	AAA_22	AAA domain	Domain	Interproscan
PF21026 all species →	SLFN_GTPase-like	Schlafen, GTPase-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007421 all species →	Domain	Schlafen, AlbA_2 domain	Interproscan
IPR029684 all species →	Family	Schlafen family	Interproscan
IPR038461 all species →	Homologous_superfamily	Schlafen, AlbA_2 domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049945 all species →	Domain	ORC1/DEAH AAA+ ATPase domain	Interproscan
IPR048729 all species →	Domain	Schlafen, GTPase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12155 all species →	SCHLAFEN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24459	SLFN13; schlafen family member 13	EC:3.1.-.-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.