Gene detail

Detailed information of ENSAPQP00000020820.1 in Leptogorgia sarmentosa

Genomic Location: chr3:18057123...18064293
NR annotation: XP_028403859.1, mucin-2-like isoform X4 [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSAPQT00000023297

ATGAAGTATAAGAATTGCTCTTGTCCGAAAACGTGCGCGAACACAGAATGTCAAGTAAAGGAGTGTGTTCCTGGATGTCAATGCCCAGAAGGAACGTATGATAATGGTAAAAGTTGCGTCCCTCTCAATCAGTGTCCTTGTATCGTGAACGGGACAATTAAACAGCCCGATGAGACATGGAAGGAAGGAGAATGTCTTTtatgtaaatgtaaaaatgGGAAGAAAAAATGTGGTCATCAATGTGATATCCAAAGTTGTCCACAGGGTCAAGAGCTACAAGATCGTCCTGGCGAATGCTGCAAATGTGTGCAAGTTTCTACTACCCCCACCACGCCATATTCAACAACCAAACACGAAATACCGAAAGGCTGtgttcaaaatggaaaaaaatatgaaaTCGAAGAAGAATGGTTTGTCTCCCCTTGTGAAAAATGTCTATGTCAGGCAAATTTGAACATCATATGTACCTACCAAACTTGCCAGGAATGCTCACCGGGATACACTAGACGTCCTGCAGAGCAaggaaaatgctgtggaacTTGCGAACCAAACCAATGTAAGGATAAAGACGGAAAAGTCTACAAGtTACACGAAGTATGGTCTCCAGATATTTGTACTAATTGTTCGTGTAATGAAAATGCCAAAATATCTTGTACCAACACTACATGTGCTGACTGTCAAACTGGCTTTGTAGAAGTTAAGGTTAATGGTCGTTGTTGTCCTAGTTGTGTCCCAACCACGACTCCTACATCTTTCCCAACAACACCGACTATGGAAGTCGAATATTGCACGTACAAGGGCAAACATTACGAGGTTGGCCACAAATGGAAAGAAAGTGAGTGTAAAAACTGCACTTGCAACCATGAGTACATCGTCGAATGTCAAGAAAGACCATGCCCGTCAACAACACCATCAGGTTTACCTTCAACCACACTTTCAACTGAAAGATCAACCACACCTTCTTCCACTGAAAAATCAACTACAACTTCTTCAACTGAAAGATCAACGACACCTTCAACTGAAAGATCAACCACACCTTCTTCAACTGAAAGATCAACCACACCTTCAACTGAAAGGTCAACCACACCTTTTTCAACTGAAAGATCAACCACACCTTCTACTGAAAGATCAACCACACCTTCATCTGAAAGATCAACCACACCTTCATCTGAAAGATCAACCACACCTTCAACTGAAAGATCGACCACACCTTCATCTGAAAGATCAACCACATCTTCAACTGAAAGATCAACCACACCTTCATCTGAAAGATCAACCACACCTTCAACTGAAAGATCGACCACACCGTCCACTGAAAGATCAACCACATCTTCAACTGAAAGGTCGACCACAACTTCTTCAACTGAAACATCAACCACCCCATCCACTGAAAGATCGACCACACCATCCACTGAAAGATCAACAACACCTTCAGGATCGACTACACCAACTAGACATAGTACACCTGTTCCGACCACTGTGGGATATTGTGTCGTAAATGGAACCCAATATGAGATTGGTAAAACGTGGAACAGGAGCAATTGCGAAACTTGTGAATGTCGTGATAACCAGCTGACAATATGTCGTTCAAAAACATGTCCTCAATGTTCATTGGGCTATTATCCTGTACAGCAACCTGGAGAATGCTGCTCTGTTTGCGtGCCAGCCACACCTCCAACTACAGTGGTATCAACAACGACGGCTCATAGTACAACCACAAGCACAACCCCAAGCAGTACCACAGGCACACCATCCCTGCCGACAACCGTTGCACCCAAACCTTGCAGTGTGGTATCGAAAAATGTGACTGTTACGAATAAGCATGGTTGCATCGGAGTACTTCAACAAACAAGATGCGTCGGTGGCTGTGAATCTAATACAGATATAGACTTTTTCACATTTCCATTTGTCCAAAGAGATTGTTCATGTTGTCAACCGTCCGCTATTGGTCGAGCACAAACTGAGATGAAATGTGGGGGAAGAAAATATCTACACAAATATATAGTTATTCGAGCCTGCGAATGTACAGCATGCGGAACTAATCCAGTTCAGAAAAAAGAGCATGAATTTTCACAACTTATCAGAAACAGTACATCCCCAATTAACATATAG

Transcript

ENSAPQT00000023297

GACAACTTTGTGTATAGGCCAAACGTATAATATCGGACATGATTTacggaaaatatttcacaacttACACAAACTTTTTTTATAGTTAATATTACCACTTCTTCTACCACGCATCCTACTTCTGTTTCTACTACTGCGTCTACCACCGCTCCCGTATGTGTATACAATGGAACCACTTACCAGTTGTTTGATGTAATCAAAGAAGGCTTATGCAAGGTTTGCAGATGTGAATCCCATGGGCAATTCAACTGTACAAGACATTGTAACATTGACACTTGTCCAAAGAATGTCGTCAAGGAATGAAGTATAAGAATTGCTCTTGTCCGAAAACGTGCGCGAACACAGAATGTCAAGTAAAGGAGTGTGTTCCTGGATGTCAATGCCCAGAAGGAACGTATGATAATGGTAAAAGTTGCGTCCCTCTCAATCAGTGTCCTTGTATCGTGAACGGGACAATTAAACAGCCCGATGAGACATGGAAGGAAGGAGAATGTCTTTtatgtaaatgtaaaaatgGGAAGAAAAAATGTGGTCATCAATGTGATATCCAAAGTTGTCCACAGGGTCAAGAGCTACAAGATCGTCCTGGCGAATGCTGCAAATGTGTGCAAGTTTCTACTACCCCCACCACGCCATATTCAACAACCAAACACGAAATACCGAAAGGCTGtgttcaaaatggaaaaaaatatgaaaTCGAAGAAGAATGGTTTGTCTCCCCTTGTGAAAAATGTCTATGTCAGGCAAATTTGAACATCATATGTACCTACCAAACTTGCCAGGAATGCTCACCGGGATACACTAGACGTCCTGCAGAGCAaggaaaatgctgtggaacTTGCGAACCAAACCAATGTAAGGATAAAGACGGAAAAGTCTACAAGtTACACGAAGTATGGTCTCCAGATATTTGTACTAATTGTTCGTGTAATGAAAATGCCAAAATATCTTGTACCAACACTACATGTGCTGACTGTCAAACTGGCTTTGTAGAAGTTAAGGTTAATGGTCGTTGTTGTCCTAGTTGTGTCCCAACCACGACTCCTACATCTTTCCCAACAACACCGACTATGGAAGTCGAATATTGCACGTACAAGGGCAAACATTACGAGGTTGGCCACAAATGGAAAGAAAGTGAGTGTAAAAACTGCACTTGCAACCATGAGTACATCGTCGAATGTCAAGAAAGACCATGCCCGTCAACAACACCATCAGGTTTACCTTCAACCACACTTTCAACTGAAAGATCAACCACACCTTCTTCCACTGAAAAATCAACTACAACTTCTTCAACTGAAAGATCAACGACACCTTCAACTGAAAGATCAACCACACCTTCTTCAACTGAAAGATCAACCACACCTTCAACTGAAAGGTCAACCACACCTTTTTCAACTGAAAGATCAACCACACCTTCTACTGAAAGATCAACCACACCTTCATCTGAAAGATCAACCACACCTTCATCTGAAAGATCAACCACACCTTCAACTGAAAGATCGACCACACCTTCATCTGAAAGATCAACCACATCTTCAACTGAAAGATCAACCACACCTTCATCTGAAAGATCAACCACACCTTCAACTGAAAGATCGACCACACCGTCCACTGAAAGATCAACCACATCTTCAACTGAAAGGTCGACCACAACTTCTTCAACTGAAACATCAACCACCCCATCCACTGAAAGATCGACCACACCATCCACTGAAAGATCAACAACACCTTCAGGATCGACTACACCAACTAGACATAGTACACCTGTTCCGACCACTGTGGGATATTGTGTCGTAAATGGAACCCAATATGAGATTGGTAAAACGTGGAACAGGAGCAATTGCGAAACTTGTGAATGTCGTGATAACCAGCTGACAATATGTCGTTCAAAAACATGTCCTCAATGTTCATTGGGCTATTATCCTGTACAGCAACCTGGAGAATGCTGCTCTGTTTGCGtGCCAGCCACACCTCCAACTACAGTGGTATCAACAACGACGGCTCATAGTACAACCACAAGCACAACCCCAAGCAGTACCACAGGCACACCATCCCTGCCGACAACCGTTGCACCCAAACCTTGCAGTGTGGTATCGAAAAATGTGACTGTTACGAATAAGCATGGTTGCATCGGAGTACTTCAACAAACAAGATGCGTCGGTGGCTGTGAATCTAATACAGATATAGACTTTTTCACATTTCCATTTGTCCAAAGAGATTGTTCATGTTGTCAACCGTCCGCTATTGGTCGAGCACAAACTGAGATGAAATGTGGGGGAAGAAAATATCTACACAAATATATAGTTATTCGAGCCTGCGAATGTACAGCATGCGGAACTAATCCAGTTCAGAAAAAAGAGCATGAATTTTCACAACTTATCAGAAACAGTACATCCCCAATTAACATATAGAATTGATAGAAACGAACTACTATATAGTGTGGCATTCATTAAGATATTTACAAGTAGTATTAACAAAGGgttatgaaatatgaatagaTGCGATGTTAATTAAACCCTaacttttgaataatttttaaatgataAATTAACGAAGAATGTGTGAGATGTAAAATTTTGTTATAATGTGCTTTTTATGTGCATGATAAAAATtctgttttataattataactttTGTTACTTATGACTTTAGACATTTGATCAAAGTTTTAAGCCAGAGCGGGACGAAACTATGCTAATTAAATAAACGCGTAAATTAAGAATGCATTAccaaacaatttaaaaacaacgaaaatttgcgCATCGTTTAAAAGGCTCACCGACTTACAGTAACAAACCTTTTGGTATCTGAACAGCAATACAACACCTAACAATGTTTTATCCATAAACTGAATTGAAAATCTCTACATTTctctaaaatgaaaatgtctaAATTTCGacatttttttattctatATAGACAAACCTATATATTATCATTAGACAAAAAACGTCATACACTACCTCTAGCTGTTACGCGAATTTGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80T03	Mucin-6 OS=Mus musculus OX=10090 GN=Muc6 PE=2 SV=1
Q2TAL6	Brorin OS=Homo sapiens OX=9606 GN=VWC2 PE=1 SV=1
Q8C8N3	Brorin OS=Mus musculus OX=10090 GN=Vwc2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009428 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00093 all species →	VWC	von Willebrand factor type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006207 all species →	Domain	Cystine knot, C-terminal	Interproscan
IPR001007 all species →	Domain	VWFC domain	Interproscan
IPR036084 all species →	Homologous_superfamily	Serine protease inhibitor-like superfamily	Interproscan
IPR051860 all species →	Family	Plasmodium Circumsporozoite Invasion Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44826 all species →	SPORE COAT PROTEIN SP85	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24518	CRIM1; cysteine-rich motor neuron 1 protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.