Gene detail

Detailed information of ENSAPQP00000020938.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028403671.1, cell cycle checkpoint protein RAD17-like isoform X2 [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000023457

TAGATCTGTATGATTTAAAAACTGAATAGACACATAAACTGGATTTTTGATCGACACTATAAAGAAGGTCTTCCAATCAAGTCAAGTCAATAAATTAGGCCACGCCACCAATATAGAAGTGGCGCAGGTGGAGAGTTCCTCGCACCCATTATATCTCTACAAGATGAAGTACTTGCTAGTTACAAATATGGCTGCCCTGGAACCCTGGAATGAGCAGATTTAAAGATtcatttcaacaaaatttaacatttgAACATTTGTTGTCGGTGAAAGAAGGCAGGATGATGCAGTAAAACTAtgAGTCAGAGGAAAAGGGGATCattaaatttgaaagaaagCCTGGAAAGGAAAAAAAGGCCTGCTAATGGATTAAGCAGTGATAAGGTTACCAAGCAAGTGAAGCCAAACCAGCAacaaagtgaaaaaAAGCAGCAGTGGGTTTCGTCATCTTTTGGTAATTTTGACATTTCTACTTCTCAATCAGTTGCCAAAAACAAGAATCCAAATCCGCAACATCTACATTTAAAAAAtaaatcaagtaaaactgaCAAGCCAAGGATTCAGatagataataataatttatggTGTGAAAAATATTCCCCTTCATCTGAGGCAGATCTTGCTGTacataaaaagaaagttgCAGAGGTCCGTGATTGGTTACTTTCCCACATTTCTCTGCAGaaAGGAAATGGTGTATTGTTACTAACTGGCCCACCGGGTAGTGGTAAAACTGCAACGTTACGAGTTTTAGCAAAGGAAATTGGCCTGGGAATACAAGAATGGGTTAACCCTTTAGCACAGGATAAAGGAGATTTCGATGATCCAGAATGGAGAAATTACGAAGGAATGGTACATCGTCAATCACAGTTGAAAAACTTTCGAGACTTTTTCTTAAGAGCAAACAAATATCCATCTCTATTTCTTGGTGTGTCTAATGCagaacaaaataaaaagatcATTCTTGTGGAGgATGTACCAAACGTGTTCTACCGAAAAGCTTCTGAACTGCACGATGTTATAGGGTCATACCAGAAATGCAGTAGAAATCCAGTGGTATTTATCGTGTCAGACAGCAACAGCAATGACACAAATGCTTATCGTTTGTTTCCCAAGGACAGCATACATGAACTCGGCATCTCACAAATCAGCTTTAATCCGGCTTCGACAACAAGTTTAAACAAACTTGTAAAGGATATAATTTCGTCCGAGGCAAGAAAGAAAAGTGCTTCATTTCAAAATCCGTCCAAAGAGACTGTCGAGAATCTGGTTGCAGGTTGTAATGGTGATATAAGAGGGCTAATTAATAATCTACAGTTCTCGTGCTTAAAAGGTTCTTCATTAACGACCTTTCAAAAACTGAAGAACAAGAAGCAATCGCATGTTGGGCGTGAAAAGTCTGGCAAGCGTTCCAGTAAAAAATCAGCTGAAACTGAAAGTACAACGTCATCATCCATTGGAGGAAAAGACACATCCCTCTTTCTATTTCGTGTTTTGGGAAAAGTTTTGTATTGCAAAAGAGAGGAAACTAGCAATGCGATGGAAAATTCTCTTccagaacatttaaaacaacatgAACGACTTCCATTAATTGAAAATCCAGAGAGTGTGTTCGAGAGAAGCCACATGTCTGGCGAAAATTTAAACTTGTACTTACATCAGAATTATCTggattttttcaacaatattgacGATGTGTGTGTCGCTTCAGACTACTTGAGTGATGCTGATCACTTGACTGGTGAATGGATgCATCGGTCAACGTTGTGTTCCTACATGCCTTCTGTTGCAATCAGAGGACTGATGTTTTGCAACCAAGGTCAAACTGTGAATCAAACCAAACGCGCATGGCGTCCTTTACATAAACCAAAGTGGTGGgatattttcaaacaaacacGATACAATAACTCTACAGCGACGGACTTATTTAAAGGTCATACCCGGAATACAGAGCACTTACACTGTGAATACATACCTTACCTTGCGCTCAGTGATGTTCCACTACACTCAGAAGGCCAAATAAATTATCTCCAAACTGTTCGCAAGTTTTCAAGAAATTCGTCTTCATTCAGAGATAATAGTGGTACTCTACAAGATAAAGAAATAGACGACAATGAAAGCGAATTAAATTCTTCTCAGACACAATCAAGTCAAGTCAGGTTGGTGGATGACAAGGAAATACTTCATTTAAATCAAACCGGAGTGGATGATGACATTCAGGAGTTTGATAGTGACTAGAGCCAAACTTgatgtaatatatattcaaaaaaaaaatatatgaaatatatatatttattccATTAACATACAGTACCATGACGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NXW6	Cell cycle checkpoint protein RAD17 OS=Mus musculus OX=10090 GN=Rad17 PE=1 SV=2
O75943	Cell cycle checkpoint protein RAD17 OS=Homo sapiens OX=9606 GN=RAD17 PE=1 SV=2
Q9XT62	Cell cycle checkpoint protein RAD17 OS=Chlorocebus aethiops OX=9534 GN=RAD17 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004588 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03215 all species →	Rad17	Rad17 P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004582 all species →	Family	Checkpoint protein Rad17/Rad24	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12172 all species →	CELL CYCLE CHECKPOINT PROTEIN RAD17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000077 all species →	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0003689 all species →	Molecular Function	DNA clamp loader activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0033314 all species →	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06662	HRAD17, RAD24; cell cycle checkpoint protein	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.