Gene detail

Detailed information of ENSAPQP00000021074.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3976630.1, Hypothetical predicted protein [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000023622

GTGgtataatatttttgcaacaTGAAGTAATACAATTGTTATTTCGTACCCGTTTGTGCGGGCTCAAGTAAATTAAATATGGCGGCTGATTTGAACTggattattataaaaaatatcaaattttatacTAGAAATTGTTGAAGtatttttcagaatttctCATAAGTCATGGATTTTTTGGCCACTCAAGAAGGGGATGTGTTTCTAAGTTCGCCTACTTCGACCAGAAATAGTTTAACTCGCGTTGAAGTAGAAAGACAAAGATCGAAAGCAGACAAAGTCACATGGTTTACTCATAATGAATTTTTGTGGCGAAGTGGTGCAAGTTTTTTATGGTTTATTTTCCTCTTGCCTGCAATTTCTGTTTTGTATGTGACTCTGGTTTTTTTTAGTCTCAAACATCCTATTGCTTGGATCACAGATGTTTTCTcaaagatattttcattttgggagctttttgtttttattttaatctTTGGAGTTATTCTAACTCCTATTTTCTTGCTTAATATCAGAATTTGCTCAGTCAAAATAAAGACAGGAGTGACCAGACTTTCGTTTGTCAAATCATTCTTTACTGTAAAACATTTATCTCATGTAACGTTTTGCATTCTTTCTGGCTCCCTTGCTATGCATTGGCTCACATCATTTACCTACCATGAGTATGGAATTCTCACTCGCAACTGTTCTACCTTATACAGTGGAAGGCAGTCATTGTGTTTCAATGAAGTGACTGTGTTTCTCCATGTTTTTGGTGGTTTCGTGGGAATTGTTTATTCCTTGttatattttaaagaaaaacattacGAGTTAAAATTTCCAGTTGTTCAGCAAGAAAGAATATTTCGAGTAAAGGCTTGTGTGGTTCCTTCTTTCTGGCGAGCTGTTATCATTTCTTTTAAGAGCGTACAGATTGGTTTTCCAGTGTATTTTTTCTTCGGCTCGTTCTTAAAGGAATTTATTCGTTGGTGTACTGGACTACGTCAAGACAGACAAATGCCTCGCTTGGACTCTCTCTATGGTATTCTTGATCTTcgtttgttttggttttgttttACATCGGGAATTGTGATTGCGTATATCTGGTTGCTGGcaaataaattgtttattattttttgtacTGAGGTTTTCAGATTTCCCATTCAGTCAACATTCAGTGAAGACGCAGATCAAAGTCTTCCAGTTGTCCTGAAATGTCAAACTGTTCCTTTACTCAAGTACCTGGCATTTAATGATTTGTGTCAGCTCTCACAGTTCTCATCAAAACGGAGGCAGCAAATATTCTCATTAAGTATTCCAGGAGGTCGACCACTGAATTGGTTGTGGGTTTCAGAAGAATGTCTGACTTTACTTAATGATCTAAAGGAGCGTCTTACTCTACATAACAACAATAATTTCGGGTATAGAGTAACCAGGAAAACTGATTCTCTCGCAAAAACACCGACGCGAGGTTTTAGAGACGTAAATCTAAGTTTATTAAAACGAACTGCAAGTTCTGTGCGATCTCAGACAAGGAGTGAAATATCAACTCCAGGAAGTAAAACTTTAAGACACACTTTAACTGGCCACCAATCATCTGGACACAAACCTTCAGAAAATAATGATAATCAGCGAGGACACAGGGTTTCAATATCTCAGAAGCTGAAACAAATTCCTTTGGTAGAATATTTAGTCGAAAAGGTGGACGAATTGGAAATGGAAGATTTATTTTTCGACGTACAGTTACAAATTTGGGCAGCTGAAGGTCTGTCGCGGTTGGTGGCTGCTTCTTTCACAGAAGATGTTTTTGGTGTCGTGCAAAAGACATTGCCATTCATACTGACCTCGCTGTTAGAACTTCTTCAGGCAGTTGAGATTTATCTCAAAAGACCAGTTGATCAAGAAATGTTATATAGAAAACGACATCCCAGTGAAGTCAGAAAAACTGTGCACGTTCTAAGAGATTCCTTACGATGTTCTTTATACAGAATAACAGAGACATTTCAGCAACACATCAGGGACATCGAATTGACAAGCAGTAACAGAGAATTTTTGGCGTCTTTCCTAAAGTATCAAGAGTAACAAGACTTGTGCGAGTGTGATTGCCGTGTAAAAAGAAAGATAAGACATGCAGGCTGCTTTTTCTGTTTTCTCTATATTTGGGTTTTTCTTCGCTATGCCTATGCTATACATATACAATGAAGTTCGCCATGCCTATGCTAAATTCTGGAAATGAGTGAGTGTTTTGTTGAGTTgctttaaaaacaaattactttAGACTTTAGTCTGTAGAGTACTGCAAGTCTGCAAAAAGGTATTGTACAGTATGGCTTGGACGAACTTGGACATGTTAATAAGGAAAGCTTTGTATGTGCAATCAAAAGGTGCATGTGTGAGTCACGAATTTGGCGGTGAAAGATGTTTAAATTCAAATGTTTGGATTGCTTTTTTGAAAATACAACAGAAACATATGAACGTCAGTATGTGGCCATGTAGAGAGCGGATATCGTcagacaacaacaacaacaacaagcatCAAAATTTCCACACACCATCTAGGCATCTAAAGACCGATTTCCAGGAAATGCCATTATTAGCATGCTTATTATCGACACAataaatacaataagattcgacgtttctgGAAAAGGCCCACATCGAATGATTCGAATCTTATCGTTGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AX31	Nucleoporin NDC1 OS=Xenopus laevis OX=8355 GN=ndc1 PE=1 SV=1
Q9BTX1	Nucleoporin NDC1 OS=Homo sapiens OX=9606 GN=NDC1 PE=1 SV=2
Q5RBY5	Nucleoporin NDC1 OS=Pongo abelii OX=9601 GN=NDC1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004883 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09531 all species →	Ndc1_Nup	Nucleoporin protein Ndc1-Nup	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019049 all species →	Family	Nucleoporin protein Ndc1-Nup	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13269 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006999 all species →	Biological Process	nuclear pore organization	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0070762 all species →	Cellular Component	nuclear pore transmembrane ring	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14315	NDC1, TMEM48; nucleoporin NDC1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.