Gene detail

Detailed information of ENSAPQP00000021298.1 in Leptogorgia sarmentosa

Genomic Location: chr3:1980863...1988943
NR annotation: CAB3977732.1, transcriptional activator GLI3-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSAPQT00000023908

ATGTGTGATAAAAGACAACAGTACCGACAGAATGCAGATGCGTCACGCGTCTCATCAACGACCGACTTAAGAATGGAGCAAAGGCAACGTATGTTTACGCGCTCGCCAGCCTTGCAAAAAGCTCATCATAATGGAAGTTTAGAAAGAGTTGATGAAGAACCAAGCACCATGGCAGACTCCTCAACTGATCATAAATACAGAACAGGACAGATGTTCCCCACTCATCATGGAGTTCATCAACATTTTGCGCATGACGGACCTTTTAAAAAACCTGCGCAACAAGGGTATTTTCGTTTTCCTATCACACCACCGTATTATGATAATAGATATGCTTGTGGAAATCCGATGTGTAGAGAAACGCATTATTGTTATGAACATCAAATGAGCCCATCAATTCCAATGCCGCCAAGTCCCTTCATGCACGATTGTCATGCAAACTTTGTGCGTCAGGTATGTCAAACCTCGCCTTTGTTTATGAACCCGAATCACATGAAGAAATCTGAAAACGATTTACCTCGACCAAAAGCAGAATGGCCGGTCGGTTACCGACCATCAAACACTGACCCACCAACACCATCAACGCCAGCACAATATTTAGCGTCTCTGTCAAACAAAGACAATAACAGCAACCCTCCTTCAACGGCTACGTCGTTACGATCGAGTAACTTAGAAGCTTTTATGCACCCTTCAAGCTTTCCTAGTCCCAGACAATCTGCGAGGTTGGCAAGGAAGCGTGCAATGTCTAGTTCTCCGTTGTCTATCGATTCTATTGATATTAACAGTTTAATTCGTACATCGCCGGACTCCTTAATTGCTTATATTAATGCACCAAGGTTATCATCTGCGGGTTCGTATGGACATCTTAGTGCAAACGGTATAAGTCCTTCACCCAAACCACCTCGTTCATCCTCAATGCGGTCAACGTTATTTGGCTGTTGGCAATCGACACCAACGGGTCCTAGAGCGAGATCTCAACTGAGCGATGTCAAGTTTACTGAAGAAACAACAGAATCCGAGGCAGAAAATGAAGACAACAACGAAGCAACGGAGAAGGatgaaaataataatgaatttttatgtttatgGAAGGattgtaatattttattcCCATCTCAAGAAGAACTTGTGAAACATGTGAATACAGATCATATCAAGAAAGAAAGGCGAGATTTTACTTGTCATTGGGTTGGTTGTCAACGAGAACAGAAACCATTCAAAGCTCAATATATGTTAGTTGTCCACATGAGACGCCATACAGGAGAAAAACCGAATAAATGTACTTACAAAGGCTGCAACAAAGCCTACTCCAGACTGGAAAACCTCAAGACACATGAACGATCTCATACAGGCGAACGACCTTATGTTTGTGAATTCGAAAATTGCAGCAAAGCTTTCACCAATGCATCAGACCGTGCTAAACATCAAAACAGAACTCATTCTTCTGTGaaaCCATACGCCTGCACAGTTGCAGGTTGTACGAAACGTTACACAGACCCAAGTTCCCTgagaaaacacaagaaaacgTGTCATCCTGAACATTTTGCTGGTGCGAAGAAGGTGATTATAGAACTACATTTTTCTTACTAtaaaattgtgaattcTTTTCCTAAAGGCAAACCTAGTGATAGCTCTAAAAGCAATAATGCATCTACGGCAAAACCATCTGTCAATGCCTCTCAAGGCTCGAACCACGATAAACAGGGTGGGAATCCATCGAGTCCTGGAACCAAAGACCAAAATGAGAGCGGTCAAGGAAAGAATATATCAAATATTCAACAAGTTGATTTTTCACCGCAAAGTTTTGCTGGAGATGTAACGTCATCATCCAGTTGCGTTGATAGTCCACATTCAGCGAATATTGTGTACGATGAGCCAGAGGAGAGTATTTCCAGTCCACAGAGCAAGACAGtcaacaatcaaaacaaaaacagtaTGTCACCAAGATCACCTCAAGCTGCTGTGCCATATTCCTTTCCAGACCGACCTGAGATGTCTGGCCCTGCACAAGGAGGAGGAGGGGAGCTTCTTGTCGAAAATATCGTTGTTCCTAATCAACTGTCGTTGCCGACtatcaataaacaaaatgagGTCGGTAGATGGATTGCAGATGTTACTCAGAGAATGAGTCATGCTGGAAGATACCCAAACGAACTAAAGGAGAACCTTCCAGTGGATTATAGTAGCCGTAGATCAAGTGAAAGTGGAGTGTCTTCATATATCAGTAGTCGACGATCAAGCGAGATGAGTACGCTTACAAGACAACAACAAGTGCCACCTTTAGTTGAGGAAGAACCAGAAGACATATATCCACCAAATAAACAAGCAAGTGACGCTCACCAAATCCAACAACAACTACCACAGATCAACCAGTGGAACAACAGTCCCAGACGCAATGAGTATTTCGATGATATGCCCAGACCTTCACCTGTTCCAGATGCATTCCATACTGATCAAAGGCGGTCAAGCAGTGGATATGGTAGTCATCATAATTTAGCTGTCATTCGAAGTCCTGTATTCCATAAAGTACCCATACAGAACCCACCTGATCCAGTTCCTAACAGACGAATGAGTGACAGCATTATATGCGAAGCTGATAGCTCAAACCGATATCTACCTCTACGTAATAACAATATAGGACCACGCAGGAGTAGCGAACCTCCGCAGTACCCGCAAGGAAGACCTCTCCCCCAACCTCCATCCGATATGAGACAACCTAACATGGTCAGTAATCGAAGACCTTTACCCAGACCGCAACCTTTGGACAGGGGACAAAAACTTTCACATTACCCATATGTCATGGACGCACCAAGCCAAGAATATCTATACCCACCCCACCCGCCCAATCACCATCAAGGAAATACGCACTCTCAACAAAGCCATCAGAAAGGATTATGGCAGTATGAACAGCACATTAACCAACAACTGCTGCAAGCACGAGACCAACAACATCAGAACAACTTCATGTCAGGTCAAGTTTATCCCAATCACGAGCAAACCATGAACGGACAAGTCCCACGGAATAATAGGCAAGTCATGAACGGGCCAATGAACAATGGGCAAGGTATGAATGGACCAATGAACAATGGGCAAGTCATGAACGGGCCAATGAACAATGGGCAAGGTATGAATGGACATGTTGAAGGTCCCTACGAGTCAATGTTAAACGGAATAAGCAATTTAAATACGAACGAAATGGGAGAAGAATCTGTTTTAAATAATGGCCCCTCCAACATGGTGGTGAATGATATGAACACTTTATTAAATTCATTGATAGAAGAAGATAGGTATTTGGAGAAAACTCAAGAACATAGTAATATGACAAGTGCGCTTTCGCATATATTTTAG

Transcript

ENSAPQT00000023908

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55878	Zinc finger protein GLI1 (Fragment) OS=Gallus gallus OX=9031 GN=GLI1 PE=2 SV=1
Q91661	Zinc finger protein GLI4 OS=Xenopus laevis OX=8355 GN=gli4 PE=2 SV=1
Q61602	Transcriptional activator GLI3 OS=Mus musculus OX=10090 GN=Gli3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007643 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR043359 all species →	Family	C2H2-type zinc-finger protein GLI-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45718 all species →	TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000021298.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.