Gene detail

Detailed information of ENSAPQP00000021369.1 in Leptogorgia sarmentosa

Genomic Location: chr3:13540622...13543582
NR annotation: CAB3992396.1, NLR family CARD domain-containing 3 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSAPQT00000024003

AAcggaaatattttaaattctgTGGATGTTTCAGAATTAGTTAGATGTCTTAATATTGTCGCTAACCTTCAGGAGTTACATATATGTCAAGAGTTGCTTTTCAGTGACATTACTAATGGTCAAAAACTCTTTGCCCAAATAAGATGCCTAGAAAATCTCAGGAAActtcatttgaataaattgaTATCAAGGGAATGTGATATCAATGCTTTAGCTGAAATGTTGCATTATTTGGTGAATTTGGAGGAGCTATCTTTGGCTGGTCTTGATGATCCAGGGTATGAAACTGTCCTTCTTGAAATAAAGTGGTTAGGAAATCTTAAAAAGATTGATCTTTCCGGTATAACATTGATTGATGTTGAGGAAGTCGAATTAGTTCAAATGCTATCATCTCTTTCGTCCTTGGAAGAGCTTATTTTAACTGATATGAGTGACATAAGTCGCAAGGGCAGTGAAAAAGTGTTTATTGCCATAAAATTGTTAAAGCGTTTAAGAAAACTAAGCTTTGGTTGTACAATTATAAGTAATGGCATGCAAGACTTCCTTGATATGCTTTCGTCTCTTCCAATTTTGGAAGTGGTTGTGTTTCCTTTGTTTGATTTAGGAAATTCAGATTTTGATCCCTTTAAATCGTTAAGATGTTTAAGAATTCTTGATCTGTGTAACACTGAAATTGATGACAGCAACGGAGAAGCTTTAGCTCGCGTGTTGCCCTCACTGAATTTGTTAGAAAAGCTAGCATTGAGATTTGTATATTACAAATATGAATCACCATTGTTTGCCGcgtttggaaaattaaaatatctcaAGGCACTATCATTGGATATATGGGGTGGCAAAATTGACATAGACGCTTTAGTTGAGGTGCTGGCGTCGCTGCATTTGCTGGAGAAATTCGAATTGTTCTTTCCAGGAAGAGGCGAACTACATGAAAAGCTACAGTGCGACGCACTAGGAAACTTGAGGTATCTCAAGGAACTTTCAGTTATGTCGTATAGCGGGAACGTTGATATAGAAGCGCTCGCTCGCGCGTTATCATCACTACAGTTGTTGGAAAAGCTAGAATTGGGATGTGAGAATTTTCCAAGTAATGAATTTGACGAACAACTGTATGCTGCGATAGGtaaattgaaacatttaaGGAGACTCAGCCTTCTGGAATTTAAGGTAACCAATGGTGAAGGTTTAGCTAAGGTGCTACCGTTACTAGAGTTGTTGGAAGAGCTAGTGTTGTGTTGGCAGCATGACGGTGTGTTTAACAGTGAACATGAGAACCAAGTGATTGCTGCAATAGGAAAATTGAGGTATTTGAAAGAACTGGATTTACAATGTTATGATCATGATATCAACATGGAAACTTTGAGTAAGACATTACCATCACTGCGATTGTTGGAAAAACTAAAGCTGGCCATGGAAGGGCTAAATGATAAGTTAGAACGACGTGAAAGTAAAGAATTATTTATCGCACTTCGACAACTGAAACGCCTGAAGGAACtacatttaaaaatttgtaaaccaaTAACTCGAACTGACGCAGAAGGTTTAGCTAGGGCGTTTATGACAtgtgaaatgttggaaaaagtaaaattagaTGCTCGTTCCTGCCTGAATGAAAGTCAATGTAAACGATTGTTAATCGCAGTTGCCAATCTAAAAAACCTGAAGGCATTGTCTTTAGAATTGGGAAAAATAACCCGAGATAACGTGGATGTATTGGTTGAGGTGTTAACATCACTGCAGGTTTTGGAAAAGTTAACGTTATTTGTTCATTCTTGCAGTATTCACGACTGTGGTGAGGACTGTGATGAGGACTGTGATGAGGGTTGTGATAGTAACAGTGATGGTGAATGTGGCCACGATACTTACAACAACAGTTGTAGCAAATGTCGCCATGAAAAAAATGAACGACTTTTAATTAAGACGAAAGTGCTTACTGCAGtaaaaaaactgaaacatTTCAAGAAATTTGAATTAGATAAATCTGCAGATTTGTCATAA

Transcript

ENSAPQT00000024003

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008056 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for ENSAPQP00000021369.1 in Leptogorgia sarmentosa.

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR028789 all species →	Family	Baculoviral IAP repeat-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46914 all species →	BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006954 all species →	Biological Process	inflammatory response	Interproscan
GO:0016045 all species →	Biological Process	detection of bacterium	Interproscan
GO:0042742 all species →	Biological Process	defense response to bacterium	Interproscan
GO:0043027 all species →	Molecular Function	cysteine-type endopeptidase inhibitor activity involved in apoptotic process	Interproscan
GO:0043066 all species →	Biological Process	negative regulation of apoptotic process	Interproscan
GO:0043154 all species →	Biological Process	obsolete negative regulation of cysteine-type endopeptidase activity involved in apoptotic process	Interproscan
GO:0070269 all species →	Biological Process	pyroptotic inflammatory response	Interproscan
GO:0072557 all species →	Cellular Component	IPAF inflammasome complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10275	FBXL9, LRRC29; F-box and leucine-rich repeat protein 9	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Leptogorgia sarmentosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Leptogorgia sarmentosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →