Gene detail

Detailed information of ENSAPQP00000021438.1 in Leptogorgia sarmentosa

Genomic Location: chr4:4223004...4227469
NR annotation: CAB3981978.1, guanylate cyclase soluble subunit beta-1-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSAPQT00000024085

atgATTGCGTTGCAGTATGGTTTTATACATTGTTGCCTGGCCGATATGGTCATCAGTGGATTCGGAGAGGAAAAGTGGCGTGAAATTATAGAAAAGGCAGGAGTAAAATTGGAAGGAGGCTCGTATCTGATTCATAAGATCTACACTGATGCCGAGACACTTAAACTAGTCGGAACTGCGTGCGAAGTACTTGGGTTGGATCTTAACGCTGCGTTGGAAGGCTTTGGCGCACATTTCTTTCATTATACCGTGCAGTCTGGCTATGACCAAATCCTGCGCGTTCTGGGAAGAAACCTTCAAGACTTTCTATGCAACTTGGATGCCCTTCATGATCACTTGGCAAACATTTATCCTGGTATGGAAGCGCCTTCGTTTCGCTGCACGGAAGCGGAGGACGGTGCGCTGCTTCTGCATTATTACACGAAACGTTCAGGGCTTGAATCCATTGTCGTCGGCTTGGTCAAAACCATTTGTACAGACATATTGCATACCAGTGTGACGGTAAAAGTATTGGCGAAAAAAGACGAGAATGGTAGCGATCACACGATCTTCGCGATCTATGAGGATAGTGAAGAGAATTCATCTTCCAAACTTGGTTTGCTCAATGCAGAAATTGAAACGAACGGCGATGTGAATGAAAACTACTTGGCAAATAATGATTCCGAAAACAATCCTATGAATGTCATGTCATTCTGCAAAGCGTTTCCTTTCCACATCCTCTTCGACGAAGATCTCACGATTATCCAAGCGGGCGTGGCTATTTTGCGTGTTCTTAACAGGCAGTCTGCAAATAAAATGAAGGTTAATGAAGTATTTACCTTACAACGGCCAAAGTTGAACTTGAGCTTTGCACCGATTCTggctcacatcaacacggttTTCATCATGGAAACGAAGGAAGGGATCATCCCTTGTGGAACCTGTGGCCCAGGACGATCCTCTTGTTCGGCGTGTGCAAAATCAAGCAAGGGCAAGGGGCCAAAAATCCGGCTCAAAGGACAAATGGTGCACGTCCCGGAGTCCAACGCCTTGTTATTCCTCTGTTCTCCACGAGTTGCCGATCTTGATGCACTTCGAGCGCAAGGACTGTTCCTGAGTGATCTTCCTTTGCATGATGCCACGCGTGACCTGATCTTCATGACCCATACACGAAGCGCTGAACGTGAACTGGTTGAACAATTGGAAGAAACGAGTAATAACTTGAAAAAAATGGAAGCATGTTTGATCGATGATAAGAAGCGAACGGACGATTTATTGCATTCAATTTTGCCGCCAAATGTTGCCGAGAAGTTGCGCGTGGATCAAGCTGTCGAGGCGGAAAATTATAAGTTGGTAACAATCTTGTTTAGTGATATTGTCGGATTCACGGCACTTTGTTCCAATGATCAAGTGGTTCCCATGGACATCGTGCGCATGCTGAATAAATTGTATACCTATTTTGATATGCTGAGTGGTGTGAACGAAGTTTATAAGGTCGAAACAATTGGTGACGCGTATATGGTAGTCGGAGGCCTTCCTACACCTTGTGAAAATCACGCAGAGAGAGTGCTAAACATGTCTTTCGGTATGATGGAAGCATCTATTAAAGTTCTGTCGCCAGCAGACAAATTGCCTTTAAAGATTCGTATCGGTATCCATTCTGGACCTGTAATGGCTGGTGTCGTAGGGAAGAAGATGCCGAGATATTGTTTATTCGGAGGTACAGTGGGAATTGCGAACAAAGCAGAATCTGGAAGCAAACCAGGTTTCATCAATGTCAGCATCGAAACTCGAAAATATTTGAAAGAGTCGGACTACAAATTCGAACCTAATCCAAATCCTACACCCGTACCATGTTTTTTCGTTTCACGAAGTCCCACATCACCTTGGAAACCATCTATTCTCGACATAATGTCCTCTGTTCCACCTCACAGCTATGGCGGGCTATTCCTTTCGCCCGTGTCCACGCCCCGTGGTGGAACGCCAGTGCGCCAGTCACCAAGCACGACTCCCCCCAATACTCCACCAAGACAACGAGCCAAACCAATGATCCAAATGTGTGCTACAGTAGATAGTTTTCCCCCTGAGGAAATCGCAaaaacaaattataatATAGTCGGTCACCTATTCAGTGAGTGTGGTTGTGTAATTTATAGCTTTACCAGTGCAACAGAACAATATCGCTTTTATGCCAATTGCCAAAATAATGTTTCGTTGATATATGcttataaaattatatcttTACTGTATGTAGTATTATTATCTTTAAATCAGAAGACGAAAACTAAAACACTTGTATGA

Transcript

ENSAPQT00000024085

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20595	Guanylate cyclase soluble subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Gucy1b1 PE=1 SV=2
P16068	Guanylate cyclase soluble subunit beta-1 OS=Bos taurus OX=9913 GN=GUCY1B1 PE=1 SV=1
Q4ZHR9	Guanylate cyclase soluble subunit beta-1 OS=Canis lupus familiaris OX=9615 GN=GUCY1B1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001299 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07701 all species →	HNOBA	Heme NO binding associated	Domain	Interproscan
PF00211 all species →	Guanylate_cyc	Adenylate and Guanylate cyclase catalytic domain	Domain	Interproscan
PF07700 all species →	HNOB	Haem-NO-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042463 all species →	Homologous_superfamily	Haem NO binding associated domain superfamily	Interproscan
IPR029787 all species →	Homologous_superfamily	Nucleotide cyclase	Interproscan
IPR001054 all species →	Domain	Adenylyl cyclase class-3/4/guanylyl cyclase	Interproscan
IPR011645 all species →	Domain	Haem NO binding associated	Interproscan
IPR024096 all species →	Homologous_superfamily	NO signalling/Golgi transport ligand-binding domain superfamily	Interproscan
IPR038158 all species →	Homologous_superfamily	H-NOX domain superfamily	Interproscan
IPR011644 all species →	Domain	Heme NO-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45655 all species →	GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009190 all species →	Biological Process	cyclic nucleotide biosynthetic process	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0004383 all species →	Molecular Function	guanylate cyclase activity	Interproscan
GO:0006182 all species →	Biological Process	cGMP biosynthetic process	Interproscan
GO:0008074 all species →	Cellular Component	guanylate cyclase complex, soluble	Interproscan
GO:0019934 all species →	Biological Process	cGMP-mediated signaling	Interproscan
GO:0070482 all species →	Biological Process	response to oxygen levels	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000021438.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Leptogorgia sarmentosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Leptogorgia sarmentosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →