Gene detail

Detailed information of ENSAPQP00000021447.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3997408.1, nuclear factor 1 A-type isoform X2 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14057	Nuclear factor 1 (Fragment) OS=Sus scrofa OX=9823 GN=NFI PE=1 SV=1
P70255	Nuclear factor 1 C-type OS=Mus musculus OX=10090 GN=Nfic PE=1 SV=1
Q90932	Nuclear factor 1 X-type OS=Gallus gallus OX=9031 GN=NFIX PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002791 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10524 all species →	NfI_DNAbd_pre-N	Nuclear factor I protein pre-N-terminus	Family	Interproscan
PF03165 all species →	MH1	MH1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020604 all species →	Domain	CTF transcription factor/nuclear factor 1, DNA-binding domain	Interproscan
IPR019548 all species →	Domain	CTF transcription factor/nuclear factor 1, N-terminal	Interproscan
IPR000647 all species →	Family	CTF transcription factor/nuclear factor 1	Interproscan
IPR003619 all species →	Domain	MAD homology 1, Dwarfin-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11492 all species →	NUCLEAR FACTOR I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09171	NFIX; nuclear factor I/X	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.