Gene detail

Detailed information of ENSAPQP00000021786.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028403719.1, protein Hook homolog 3-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000024526

ATGGATGAAGAGAGCTTATGTGACAGTTTGATAATTTGGCTGAATACATTTGACAATATTGAAGCACCCAAGTCAACTGCTGCAGAATTGAGTGATGGTGTGGCAATGTGTCAATGCCTAGCTGCAATTGCTCCGGATTGGTTTGATGATGAATGGATGTCAAAAGTGAAGAGGGATGCAGGAGATAACTGGAGGTTAAAGTGTAGCAATCTTAAGAAATTATTAAAAGGGATTATGGATTATTACACAGAGGTTCTCAATATGGACATTGTTGGATTTACTTTGCCTGATGTTGCTTGTATTGCTGAAAAACATGACAAAGAGGAATTGGGGAGATTATTGCAACTTATACTGGGATGTGCTGTCAATTGTGATGAAAAACAAGAATATATCCAAAACATCATGCAAATGGTGGAATCAGTTCAACATGTTGTGATGAATGCAATACAAGAGTTGATGGCATGTAAAGATGTTTCAAGTCCTGTTGATAACGATACATTTAAAGATCTAGAAGTACAgCATAAATCAACACTTGATCAATTGAGTTCTGTTTTGGCACAGAAGGAAGAAATTGCTCAAAGATGTCATGAACTTGATGAGCAATTATCATTACTGAGAGAACATCATTCAACACTCGAAACAGAAAATCAAGTTCTTCGAAGACAGTTAAATAACAGAAGTGATGATAACAACCAATCTGGAGATCCTAACGAACGTTTCAGCCAACTTCAACAACAGCTTGAACAACTCAAGGAACAGAACTTCTCTCTTGAATCAAGTCGGGATGAATTTCGTATAAAATGCAGTACATacgagaaagaaaatttggatTTGAGTGAGCGAATAGAACAACTTCAGAATCTGGCcgaggaatctcaacagttACGAGACGAAATGGATGTACTTCGTCACACCCAAGAAAAAGTCGCTAAATATGAATCCACTATAGACTCGTATAAGAAAAAGTTGGAGGAATTGACGGAAATGAGGAAACAGATGAAAACAATGGAGGAAAAAAATGCATCATACATGCAGCAAACAATTGATCTGCAAGAAGATCTACGGAAAGCAAATGCTCTTAAGACGCAACTCGAAAATTACAAGAAGCAGGTTCATCAGTTACAAAGCTCGGTGTCGGAAAATGAACGAAGGGCAGATAAGGCTGATTTTGAATGCAAGCGCGGCAAAGATAAACTTATTCAGCTGCAAGGAGAAAATGAACGTCTGAAAGAAGAGAGAAATTGTCTTCGAGAGAAAAACGAGGAACTGACACTAAGTGAAGTATCGAGAACAACCGGAGGCACATCATCACTGCTTGACGGCTCGGATAGTAATGGGTTGTTCATGGCTGATTTACCGCCTGAGGCCAGAGAAAGAATTATCGTCCTGGAGCATCAAAATAAGAAACTCAAAGAACAATCAGCTGGTGAAGAATCTGAGcagACTCAATTATTGAAGAGCTTATTAGAAGACGCCAATGCTGTCAAAGAACAattgaaaaaagaaacgaGgGAGTTGAATCAACGTAACATGGAGCTAGAAAGTGAACTGGACGAAATGAGAAATCAACAAAGTAATGTACGagaagagaaagaaaatgaaCTACAACAAAAATACATGGATCATTTACAAAAATTAAAAGACGCGAATGATGAACTTCAGAAGAAGAAAACGTACATGGAATCCCTTGAGCCTCGAACCAATGCAACAGCGGAAAAAGTAAATGAACTGCAAGATTTGTTGAGCAAAAAAGATCAAGAAATGAAAGCTATGGAAGCGaaatacaagaaatatttagaaaaagcaaaaagtGTTATCAAGACTCTAGATCCCAAGCAAAATGGACCTGGAAATACACCAGAGATTGACACATTGAAGAATCAACttcaagaaaaagataaatttatcgaGCATTTAGAGCGAGATCAGGAGAAGATGAAACTAACTCGTGAACGCGAAGAGAAATTAATGGTAACAGCTTGGTATGAAATGGCGATGCAACTTCATAAGAAAGCTGCTGAAGAACGGTTATCAGGCAGTACAGGAATGTCTTTCTTAGCAAGACAGCGTCAGGCGGCAGGACGAAGATCCTTATCATCAAGTACAAAATAA

Transcript

ENSAPQT00000024526

tgaaatctaccATGTCAATACATTACCTCGATCATTTTTTCCAAGGTTTTTGCGATGTTATTCGGTCCTTTACGCCACGATTGACTGATCGTTCTGATTCCAAATATTGCACAAGTCAGCGGAGTGCACTGCAGACTCAAATTCTGTATTGTTGTCGTCTGTCGCAGATCTTCGTGTTGTGATCAAAGGTGTTGAACcagaataaaattcatatcttcacatttactgattttatttttaagaaatataACTGAATAAAATATGGATGAAGAGAGCTTATGTGACAGTTTGATAATTTGGCTGAATACATTTGACAATATTGAAGCACCCAAGTCAACTGCTGCAGAATTGAGTGATGGTGTGGCAATGTGTCAATGCCTAGCTGCAATTGCTCCGGATTGGTTTGATGATGAATGGATGTCAAAAGTGAAGAGGGATGCAGGAGATAACTGGAGGTTAAAGTGTAGCAATCTTAAGAAATTATTAAAAGGGATTATGGATTATTACACAGAGGTTCTCAATATGGACATTGTTGGATTTACTTTGCCTGATGTTGCTTGTATTGCTGAAAAACATGACAAAGAGGAATTGGGGAGATTATTGCAACTTATACTGGGATGTGCTGTCAATTGTGATGAAAAACAAGAATATATCCAAAACATCATGCAAATGGTGGAATCAGTTCAACATGTTGTGATGAATGCAATACAAGAGTTGATGGCATGTAAAGATGTTTCAAGTCCTGTTGATAACGATACATTTAAAGATCTAGAAGTACAgCATAAATCAACACTTGATCAATTGAGTTCTGTTTTGGCACAGAAGGAAGAAATTGCTCAAAGATGTCATGAACTTGATGAGCAATTATCATTACTGAGAGAACATCATTCAACACTCGAAACAGAAAATCAAGTTCTTCGAAGACAGTTAAATAACAGAAGTGATGATAACAACCAATCTGGAGATCCTAACGAACGTTTCAGCCAACTTCAACAACAGCTTGAACAACTCAAGGAACAGAACTTCTCTCTTGAATCAAGTCGGGATGAATTTCGTATAAAATGCAGTACATacgagaaagaaaatttggatTTGAGTGAGCGAATAGAACAACTTCAGAATCTGGCcgaggaatctcaacagttACGAGACGAAATGGATGTACTTCGTCACACCCAAGAAAAAGTCGCTAAATATGAATCCACTATAGACTCGTATAAGAAAAAGTTGGAGGAATTGACGGAAATGAGGAAACAGATGAAAACAATGGAGGAAAAAAATGCATCATACATGCAGCAAACAATTGATCTGCAAGAAGATCTACGGAAAGCAAATGCTCTTAAGACGCAACTCGAAAATTACAAGAAGCAGGTTCATCAGTTACAAAGCTCGGTGTCGGAAAATGAACGAAGGGCAGATAAGGCTGATTTTGAATGCAAGCGCGGCAAAGATAAACTTATTCAGCTGCAAGGAGAAAATGAACGTCTGAAAGAAGAGAGAAATTGTCTTCGAGAGAAAAACGAGGAACTGACACTAAGTGAAGTATCGAGAACAACCGGAGGCACATCATCACTGCTTGACGGCTCGGATAGTAATGGGTTGTTCATGGCTGATTTACCGCCTGAGGCCAGAGAAAGAATTATCGTCCTGGAGCATCAAAATAAGAAACTCAAAGAACAATCAGCTGGTGAAGAATCTGAGcagACTCAATTATTGAAGAGCTTATTAGAAGACGCCAATGCTGTCAAAGAACAattgaaaaaagaaacgaGgGAGTTGAATCAACGTAACATGGAGCTAGAAAGTGAACTGGACGAAATGAGAAATCAACAAAGTAATGTACGagaagagaaagaaaatgaaCTACAACAAAAATACATGGATCATTTACAAAAATTAAAAGACGCGAATGATGAACTTCAGAAGAAGAAAACGTACATGGAATCCCTTGAGCCTCGAACCAATGCAACAGCGGAAAAAGTAAATGAACTGCAAGATTTGTTGAGCAAAAAAGATCAAGAAATGAAAGCTATGGAAGCGaaatacaagaaatatttagaaaaagcaaaaagtGTTATCAAGACTCTAGATCCCAAGCAAAATGGACCTGGAAATACACCAGAGATTGACACATTGAAGAATCAACttcaagaaaaagataaatttatcgaGCATTTAGAGCGAGATCAGGAGAAGATGAAACTAACTCGTGAACGCGAAGAGAAATTAATGGTAACAGCTTGGTATGAAATGGCGATGCAACTTCATAAGAAAGCTGCTGAAGAACGGTTATCAGGCAGTACAGGAATGTCTTTCTTAGCAAGACAGCGTCAGGCGGCAGGACGAAGATCCTTATCATCAAGTACAAAATAACCACAGCCACATCTCCTCGATAGTGTACGTTGGAATACATTTTAGTCTGTTGTGTTTCAGTGGGGCCACTATTAGTACATTGGCGTGGAATTGCACCATGCATTAATAGATACTTATGTGATTATATCTTGTGTGAATAATCGCATGCAGACTGACATTGTGTGAACAATTTTACATATATATCCATTTTAAATTAAGATTTCGCATAGTATCTATACATAACCTGAAAATAGCACGTTTTCTTATACATAATatgttatataattaaataatgtatattttagcaaaagtaAAAAGCAAAAACCAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BUK6	Protein Hook homolog 3 OS=Mus musculus OX=10090 GN=Hook3 PE=1 SV=2
B6MFW3	Protein Hook homolog OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_281537 PE=3 SV=1
Q86VS8	Protein Hook homolog 3 OS=Homo sapiens OX=9606 GN=HOOK3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004580 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05622 all species →	HOOK	HOOK protein coiled-coil region	Coiled-coil	Interproscan
PF19047 all species →	HOOK_N	HOOK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR008636 all species →	Domain	Hook, C-terminal	Interproscan
IPR043936 all species →	Domain	HOOK, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18947 all species →	HOOK PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0030705 all species →	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16536	HOOK3; protein HOOK3	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.