Gene detail

Detailed information of ENSAPQP00000022269.1 in Leptogorgia sarmentosa

Genomic Location: chr4:2347466...2354347
NR annotation: XP_028412759.1, coiled-coil domain-containing protein 39-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSAPQT00000025085

ATGGAGACAGTGTTAAGTGATTTTCCTTTGGACGAAGGTATCGCAGTGCCTGTTGCAAACGcagaaaataaacaacttgAAGTTGAGCTTGATAGTAAACAGAAAGAAATTCTGAATAACAAAGAAAAAGTAGGAGATCATAAAGAAAGAATTGATGCAATAAATGatcatttgaaaaatgtcgTGCAAGAACTTCAACACACACAGGAACTTCTTAATGCAAGAAAACGAGAGATTAACACTGAAGatcatttgaaacaaattgCTGAGCGGGAAGAAGGAAGGTTacgaaatgaaatgaaaagaatacaaaatgacttaaatgaACTAGACAGTCGGAGAAATATCGCAGAGAATAACATCTTTACGAAAACGAAGCAATTGGAAGAACTAAAATCTCAAATGAATTGGGATCAAAAAGCTTTAGAAGCTTGGTTAGAAGAATCTGCAAAACGCGACGAAGATGCGTTGATTCTTGAGAAATACACTCGATCTGATGAAAGCAAAGTGAAGTCCTTGTCgttgaaaacagaaaaaatgaCCGAAGAAAGTCAGAAGAAACGTCGAGATCTGGAACATGAAATAAATCGTACAGCGACTTCACAGGTCGAGCTGGATAAAACAGCTGAAGAATTTCGTAAGATCCACGCAGAACGTCAAAATCTTCTCGAGCAATGGGAGAATACCATTGAACAGATGCAAAGACGTGACAGAGATATGGATCAGTTGGCTGTGAGGCTTGCTGAATTCCGACTAGAAGTGAGGTCGAAAGAAGATTTGATTAAGGATCGACAGaattttcttgataacgAATTGAACAATAACGCTGAAAAAGAGAAGAAAGTGTCGAATTCAGAAAGACAATCCGCTAAGTTACGTCTACAATATCAAGAAGTTGAGAATGATAGAGTCCGTTTCCAAGATGagCTCGAGACTCTCAAGTATTCTGTAGATAGAACTGGTAAAGATCTCAACAATGCTCGTGAAAAATCCAGTACTCTAAAGAAGGAGGTGAAAACACGGCAGGAAAAACTTTCAGAAGTGCAAAGTGAGCGAGATATGTTGAATCAGAGATTAAAAGAAACCATTGAATCGACAATGACGGCGGAAGAACGAGCATTTGCTATGGAACAATtattgaaagaagaagaagctaGAATACATCAAGTTGAAAAAGAATTAGCAAGACTTCGTGAGATACAGTTTCGCAAAACTGAAGAACTTCACAGCTGTAAAGTGAAAGAACAGAATACATCTGCGGAAATTCAGGGCTCTCGAGCTGCGTCAAGAAATTTAAGTAGTAAACTGCACAAGTTGGATCAAGACTctttaaaacaacaagaaaTCCTTTATATGCAGGACTTTCAGCTTCAACAGCTTGAGAGAAAATTGATGCGTATGCAAGGAGAAAGAAGCAATGAAGAAAAACAACTCCTAGAAGAAAAAATCAAGGAATTATCCAGTCAACTGGAAGAACAAAATTCAATTCACGCTTTGCTAACAGCACAGATGAAGAAACTTGGTGTAAAGGAGCTCAATCTGCACAATGACAGTTCTGAAAGagaattgaagaaaatgaTTAAAAGTAAAGAGGACGCAATggttgatgaaaacattctgaagCTGGAGATTAAAAGACTGCGAGAATTCTTAAGTGGCAAAGCTGATGATGTTTTGAGTTTAGAAAAAAGAAAGTTGAGATTACAGGCATCAATGAATCAGCGACGACAGGAAATCAAAGATCACAAAGATATGCTTCGTGCTCAAATAAAGAGCGCCAATGAGGAAAGACAGACTGTTAGCGCTGAACTTCATGATCGTatatcaaaaattgaaaaattgagGAAAAGATACGAGATTTTGATGGTTTCCATGGCGCCTCCCGAAGGAGAGGAAGAAAAATCCCAAGCATATTACGTCATCAAAGCAGCACAGGAGAAAGAAGAATTACAACGTGAAGGAGATGAACTTGACGCGAAAATAAGGAAAGCTGAAAAAGAAATAAGGGCGCTGGAAAATACGCTGCGTCTGATGAATGGTCGAAATGAAAATTACCGCAAAAGTTTTAACAAAGTCGATCAGACAAGCGaagaatttgaagaaaaagaaaaacttgAAGAGCAGCTTAGGGCAGTGATGGAGAAATATAAGTTCAAACGAAGACAAATCCGTGAAGTACAGGAAGATCTTGAAACTATGAACAGTTCTTTAACCGCTTTAGCTAAAGATGAACAAGATTTAGTGGAACTTCTCAAGGAAAGAGAAACCAAGATGGCACATTTGGAAAACGAGTTAAATGATCAGAAAGCTAAGCAAGAAAGAACAAGAAAACACAACAGTCGTATGGTACGAGATATCAGAAGTGCGCAGAAAGTCAAAGGAGAGACGCACGAGGAAAGAGATATTGAATTGCGGGAGATACGTGATTTTAATACAGATATCATGAAACAGATTGGTGTCGTTGTCCAAACACATGGTGATATGTCAGCTGCAACACAACTCTACTTTAATCAGGCTGGATTACCCGCACCACCTTCACCCAGCCGCCTGGGATCACGACCTTCGTCAGTGCAATCATCTCGTAGCTCATCACTTTGTTGGCCACAGATGAAATTATTCTCCCTTCTAGGTGCGTCACGATCTGGTATCGCAGGCAGTTCTGTCACCAAAATGAAACCCAGCAGTTCCCGAAAAGGATCAAAAACTGGTTCGCCAGTGGGATCCAAACCAGGATCTCGTTCTGGTTCACAGCCTGGTTCACCAGCAGGCTCGAAACCAGGATCCAGGCAAGGTTCGGCACGCACAGGTCGGCGGTCTTAA

Transcript

ENSAPQT00000025085

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0V9R4	Coiled-coil domain-containing protein 39 OS=Xenopus tropicalis OX=8364 GN=ccdc39 PE=2 SV=1
E2R1I5	Coiled-coil domain-containing protein 39 OS=Canis lupus familiaris OX=9615 GN=CCDC39 PE=3 SV=1
Q9UFE4	Coiled-coil domain-containing protein 39 OS=Homo sapiens OX=9606 GN=CCDC39 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006393 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for ENSAPQP00000022269.1 in Leptogorgia sarmentosa.

InterPro

InterPro term	Type	Description	Source
IPR033290 all species →	Family	Coiled-coil domain-containing protein 39	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18962 all species →	COILED-COIL DOMAIN-CONTAINING PROTEIN 39	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0036159 all species →	Biological Process	inner dynein arm assembly	Interproscan
GO:0060285 all species →	Biological Process	cilium-dependent cell motility	Interproscan
GO:0060287 all species →	Biological Process	epithelial cilium movement involved in determination of left/right asymmetry	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23729	CCDC39; coiled-coil domain-containing protein 39	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.